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In silico characterization of tandem repeats in Trichophyton rubrum and related dermatophytes provides new insights into their role in pathogenesis.

Franco ME, Bitencourt TA, Marins M, Fachin AL.

Database (Oxford). 2017 Jan 1;2017. doi: 10.1093/database/bax035.


Protein-Based Inheritance: Epigenetics beyond the Chromosome.

Harvey ZH, Chen Y, Jarosz DF.

Mol Cell. 2018 Jan 18;69(2):195-202. doi: 10.1016/j.molcel.2017.10.030. Epub 2017 Nov 16. Review.


The impact of bottlenecks on microbial survival, adaptation, and phenotypic switching in host-pathogen interactions.

Moxon R, Kussell E.

Evolution. 2017 Dec;71(12):2803-2816. doi: 10.1111/evo.13370. Epub 2017 Oct 30.


Adaptive tuning of mutation rates allows fast response to lethal stress in Escherichia coli.

Swings T, Van den Bergh B, Wuyts S, Oeyen E, Voordeckers K, Verstrepen KJ, Fauvart M, Verstraeten N, Michiels J.

Elife. 2017 May 2;6. pii: e22939. doi: 10.7554/eLife.22939.


Genome Mutational and Transcriptional Hotspots Are Traps for Duplicated Genes and Sources of Adaptations.

Fares MA, Sabater-Muñoz B, Toft C.

Genome Biol Evol. 2017 May 1;9(5):1229-1240. doi: 10.1093/gbe/evx085.


Environmental Growth Conditions of Trichoderma spp. Affects Indole Acetic Acid Derivatives, Volatile Organic Compounds, and Plant Growth Promotion.

Nieto-Jacobo MF, Steyaert JM, Salazar-Badillo FB, Nguyen DV, Rostás M, Braithwaite M, De Souza JT, Jimenez-Bremont JF, Ohkura M, Stewart A, Mendoza-Mendoza A.

Front Plant Sci. 2017 Feb 9;8:102. doi: 10.3389/fpls.2017.00102. eCollection 2017.


Not all predicted CRISPR-Cas systems are equal: isolated cas genes and classes of CRISPR like elements.

Zhang Q, Ye Y.

BMC Bioinformatics. 2017 Feb 6;18(1):92. doi: 10.1186/s12859-017-1512-4.


Disentangling genetic and epigenetic determinants of ultrafast adaptation.

Gjuvsland AB, Zörgö E, Samy JK, Stenberg S, Demirsoy IH, Roque F, Maciaszczyk-Dziubinska E, Migocka M, Alonso-Perez E, Zackrisson M, Wysocki R, Tamás MJ, Jonassen I, Omholt SW, Warringer J.

Mol Syst Biol. 2016 Dec 15;12(12):892. doi: 10.15252/msb.20166951.


Selection Transforms the Landscape of Genetic Variation Interacting with Hsp90.

Geiler-Samerotte KA, Zhu YO, Goulet BE, Hall DW, Siegal ML.

PLoS Biol. 2016 Oct 21;14(10):e2000465. doi: 10.1371/journal.pbio.2000465. eCollection 2016 Oct.


Evolutionary learning of adaptation to varying environments through a transgenerational feedback.

Xue B, Leibler S.

Proc Natl Acad Sci U S A. 2016 Oct 4;113(40):11266-11271. Epub 2016 Sep 19.


Facing environmental predictability with different sources of epigenetic variation.

Leung C, Breton S, Angers B.

Ecol Evol. 2016 Jun 28;6(15):5234-45. doi: 10.1002/ece3.2283. eCollection 2016 Aug.


Paternal chronic colitis causes epigenetic inheritance of susceptibility to colitis.

Tschurtschenthaler M, Kachroo P, Heinsen FA, Adolph TE, Rühlemann MC, Klughammer J, Offner FA, Ammerpohl O, Krueger F, Smallwood S, Szymczak S, Kaser A, Franke A.

Sci Rep. 2016 Aug 19;6:31640. doi: 10.1038/srep31640.


Evolutionary Phase Transitions in Random Environments.

Skanata A, Kussell E.

Phys Rev Lett. 2016 Jul 15;117(3):038104. doi: 10.1103/PhysRevLett.117.038104. Epub 2016 Jul 15.


Sir2 regulates stability of repetitive domains differentially in the human fungal pathogen Candida albicans.

Freire-Benéitez V, Gourlay S, Berman J, Buscaino A.

Nucleic Acids Res. 2016 Nov 2;44(19):9166-9179. Epub 2016 Jul 1.


Quantifying intrinsic and extrinsic control of single-cell fates in cancer and stem/progenitor cell pedigrees with competing risks analysis.

Cornwell JA, Hallett RM, der Mauer SA, Motazedian A, Schroeder T, Draper JS, Harvey RP, Nordon RE.

Sci Rep. 2016 Jun 1;6:27100. doi: 10.1038/srep27100.


Epigenetic Inheritance and Its Role in Evolutionary Biology: Re-Evaluation and New Perspectives.

Burggren W.

Biology (Basel). 2016 May 25;5(2). pii: E24. doi: 10.3390/biology5020024.


Host-induced aneuploidy and phenotypic diversification in the Sudden Oak Death pathogen Phytophthora ramorum.

Kasuga T, Bui M, Bernhardt E, Swiecki T, Aram K, Cano LM, Webber J, Brasier C, Press C, Grünwald NJ, Rizzo DM, Garbelotto M.

BMC Genomics. 2016 May 20;17:385. doi: 10.1186/s12864-016-2717-z.


Epigenetic Mechanisms and Microbiota as a Toolbox for Plant Phenotypic Adjustment to Environment.

Vannier N, Mony C, Bittebière AK, Vandenkoornhuyse P.

Front Plant Sci. 2015 Dec 23;6:1159. doi: 10.3389/fpls.2015.01159. eCollection 2015.


The inhibition of the apoptosis pathway by the Coxiella burnetii effector protein CaeA requires the EK repetition motif, but is independent of survivin.

Bisle S, Klingenbeck L, Borges V, Sobotta K, Schulze-Luehrmann J, Menge C, Heydel C, Gomes JP, Lührmann A.

Virulence. 2016 May 18;7(4):400-12. doi: 10.1080/21505594.2016.1139280. Epub 2016 Jan 13.


Combinatorial biosynthesis of RiPPs: docking with marine life.

Sardar D, Schmidt EW.

Curr Opin Chem Biol. 2016 Apr;31:15-21. doi: 10.1016/j.cbpa.2015.11.016. Epub 2015 Dec 19. Review.

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