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Methanogenic Community Was Stable in Two Contrasting Freshwater Marshes Exposed to Elevated Atmospheric CO2.

Lin Y, Liu D, Yuan J, Ye G, Ding W.

Front Microbiol. 2017 May 24;8:932. doi: 10.3389/fmicb.2017.00932. eCollection 2017.


Microbial Community Structure in the Rhizosphere of Rice Plants.

Breidenbach B, Pump J, Dumont MG.

Front Microbiol. 2016 Jan 13;6:1537. doi: 10.3389/fmicb.2015.01537. eCollection 2015.


Comparisons of diazotrophic communities in native and agricultural desert ecosystems reveal plants as important drivers in diversity.

Köberl M, Erlacher A, Ramadan EM, El-Arabi TF, Müller H, Bragina A, Berg G.

FEMS Microbiol Ecol. 2016 Feb;92(2). pii: fiv166. doi: 10.1093/femsec/fiv166. Epub 2015 Dec 23.


Methane production potentials, pathways, and communities of methanogens in vertical sediment profiles of river Sitka.

Mach V, Blaser MB, Claus P, Chaudhary PP, Rulík M.

Front Microbiol. 2015 May 21;6:506. doi: 10.3389/fmicb.2015.00506. eCollection 2015.


The Methanosarcina acetivorans thioredoxin system activates DNA binding of the redox-sensitive transcriptional regulator MsvR.

Sheehan R, McCarver AC, Isom CE, Karr EA, Lessner DJ.

J Ind Microbiol Biotechnol. 2015 Jun;42(6):965-9. doi: 10.1007/s10295-015-1592-y. Epub 2015 Mar 20.


Air-adapted Methanosarcina acetivorans shows high methane production and develops resistance against oxygen stress.

Jasso-Chávez R, Santiago-Martínez MG, Lira-Silva E, Pineda E, Zepeda-Rodríguez A, Belmont-Díaz J, Encalada R, Saavedra E, Moreno-Sánchez R.

PLoS One. 2015 Feb 23;10(2):e0117331. doi: 10.1371/journal.pone.0117331. eCollection 2015.


Seasonal dynamics of bacterial and archaeal methanogenic communities in flooded rice fields and effect of drainage.

Breidenbach B, Conrad R.

Front Microbiol. 2015 Jan 8;5:752. doi: 10.3389/fmicb.2014.00752. eCollection 2014.


Diversity and distribution of archaea community along a stratigraphic permafrost profile from Qinghai-Tibetan Plateau, China.

Wei S, Cui H, He H, Hu F, Su X, Zhu Y.

Archaea. 2014 Nov 25;2014:240817. doi: 10.1155/2014/240817. eCollection 2014.


Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine.

Borrel G, Parisot N, Harris HM, Peyretaillade E, Gaci N, Tottey W, Bardot O, Raymann K, Gribaldo S, Peyret P, O'Toole PW, Brugère JF.

BMC Genomics. 2014 Aug 13;15:679. doi: 10.1186/1471-2164-15-679.


Response of a rice paddy soil methanogen to syntrophic growth as revealed by transcriptional analyses.

Liu P, Yang Y, Lü Z, Lu Y.

Appl Environ Microbiol. 2014 Aug;80(15):4668-76.


Safety in numbers: multiple occurrences of highly similar homologs among Azotobacter vinelandii carbohydrate metabolism proteins probably confer adaptive benefits.

Mærk M, Johansen J, Ertesvåg H, Drabløs F, Valla S.

BMC Genomics. 2014 Mar 14;15:192. doi: 10.1186/1471-2164-15-192.


Recruiting human microbiome shotgun data to site-specific reference genomes.

Xie G, Lo CC, Scholz M, Chain PS.

PLoS One. 2014 Jan 15;9(1):e84963. doi: 10.1371/journal.pone.0084963. eCollection 2014.


Methanogens at the top of the world: occurrence and potential activity of methanogens in newly deglaciated soils in high-altitude cold deserts in the Western Himalayas.

Aschenbach K, Conrad R, Reháková K, Doležal J, Janatková K, Angel R.

Front Microbiol. 2013 Dec 3;4:359. doi: 10.3389/fmicb.2013.00359. eCollection 2013.


Elevated ground-level O3 negatively influences paddy methanogenic archaeal community.

Feng Y, Lin X, Yu Y, Zhang H, Chu H, Zhu J.

Sci Rep. 2013 Nov 12;3:3193. doi: 10.1038/srep03193.


Assessment of the oxidant tolerance of Methanosarcina acetivorans.

Horne AJ, Lessner DJ.

FEMS Microbiol Lett. 2013 Jun;343(1):13-9. doi: 10.1111/1574-6968.12115. Epub 2013 Mar 15.


Reversible oxygen-tolerant hydrogenase carried by free-living N2-fixing bacteria isolated from the rhizospheres of rice, maize, and wheat.

Roumagnac P, Richaud P, Barakat M, Ortet P, Roncato MA, Heulin T, Peltier G, Achouak W, Cournac L.

Microbiologyopen. 2012 Dec;1(4):349-61. doi: 10.1002/mbo3.37. Epub 2012 Sep 12.


Current opportunities and challenges in microbial metagenome analysis--a bioinformatic perspective.

Teeling H, Glöckner FO.

Brief Bioinform. 2012 Nov;13(6):728-42. doi: 10.1093/bib/bbs039. Epub 2012 Sep 9. Review.


Genome analysis and heterologous expression of acetate-activating enzymes in the anammox bacterium Kuenenia stuttgartiensis.

Russ L, Harhangi HR, Schellekens J, Verdellen B, Kartal B, Op den Camp HJ, Jetten MS.

Arch Microbiol. 2012 Nov;194(11):943-8. doi: 10.1007/s00203-012-0829-7. Epub 2012 Jul 1.


Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing.

Wirth R, Kovács E, Maróti G, Bagi Z, Rákhely G, Kovács KL.

Biotechnol Biofuels. 2012 Jul 12;5:41. doi: 10.1186/1754-6834-5-41. eCollection 2012.


Methanocella conradii sp. nov., a thermophilic, obligate hydrogenotrophic methanogen, isolated from Chinese rice field soil.

Lü Z, Lu Y.

PLoS One. 2012;7(4):e35279. doi: 10.1371/journal.pone.0035279. Epub 2012 Apr 17.

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