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Items: 1 to 20 of 61

1.

A blood-based gene expression and signaling pathway analysis to differentiate between high and low grade gliomas.

Ponnampalam SN, Kamaluddin NR, Zakaria Z, Matheneswaran V, Ganesan D, Haspani MS, Ryten M, Hardy JA.

Oncol Rep. 2017 Jan;37(1):10-22. doi: 10.3892/or.2016.5285. Epub 2016 Nov 29.

2.

Genomic-Wide Analysis with Microarrays in Human Oncology.

Inaoka K, Inokawa Y, Nomoto S.

Microarrays (Basel). 2015 Oct 16;4(4):454-73. doi: 10.3390/microarrays4040454. Review.

3.

Systematic Review of Micro-RNA Expression in Pre-Eclampsia Identifies a Number of Common Pathways Associated with the Disease.

Sheikh AM, Small HY, Currie G, Delles C.

PLoS One. 2016 Aug 16;11(8):e0160808. doi: 10.1371/journal.pone.0160808. eCollection 2016. Review.

4.

Integrated analysis of the Plasmodium species transcriptome.

Hoo R, Zhu L, Amaladoss A, Mok S, Natalang O, Lapp SA, Hu G, Liew K, Galinski MR, Bozdech Z, Preiser PR.

EBioMedicine. 2016 May;7:255-66. doi: 10.1016/j.ebiom.2016.04.011. Epub 2016 Apr 22.

5.

aRrayLasso: a network-based approach to microarray interconversion.

Brown AS, Patel CJ.

Bioinformatics. 2015 Dec 1;31(23):3859-61. doi: 10.1093/bioinformatics/btv469. Epub 2015 Aug 17.

6.

Microarray-based RNA profiling of breast cancer: batch effect removal improves cross-platform consistency.

Larsen MJ, Thomassen M, Tan Q, Sørensen KP, Kruse TA.

Biomed Res Int. 2014;2014:651751. doi: 10.1155/2014/651751. Epub 2014 Jul 3.

7.

Evaluation of high throughput gene expression platforms using a genomic biomarker signature for prediction of skin sensitization.

Forreryd A, Johansson H, Albrekt AS, Lindstedt M.

BMC Genomics. 2014 May 16;15:379. doi: 10.1186/1471-2164-15-379.

8.

Challenges for MicroRNA Microarray Data Analysis.

Wang B, Xi Y.

Microarrays (Basel). 2013 Jun;2(2). doi: 10.3390/microarrays2020034.

9.

Assessing the validity and reproducibility of genome-scale predictions.

Sugden LA, Tackett MR, Savva YA, Thompson WA, Lawrence CE.

Bioinformatics. 2013 Nov 15;29(22):2844-51. doi: 10.1093/bioinformatics/btt508. Epub 2013 Sep 17.

10.

Estimating relative noise to signal in DNA microarray data.

Hong H, Hong Q, Liu J, Tong W, Shi L.

Int J Bioinform Res Appl. 2013;9(5):433-48. doi: 10.1504/IJBRA.2013.056085.

11.

A novel method for cross-species gene expression analysis.

Kristiansson E, Österlund T, Gunnarsson L, Arne G, Larsson DG, Nerman O.

BMC Bioinformatics. 2013 Feb 27;14:70. doi: 10.1186/1471-2105-14-70.

12.

Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication.

Peña-Diaz J, Hegre SA, Anderssen E, Aas PA, Mjelle R, Gilfillan GD, Lyle R, Drabløs F, Krokan HE, Sætrom P.

Nucleic Acids Res. 2013 Mar 1;41(5):2846-56. doi: 10.1093/nar/gks1336. Epub 2013 Jan 15.

13.

Comparability and reproducibility of biomedical data.

Huang Y, Gottardo R.

Brief Bioinform. 2013 Jul;14(4):391-401. doi: 10.1093/bib/bbs078. Epub 2012 Nov 27. Review.

14.

A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis.

Vanholme R, Storme V, Vanholme B, Sundin L, Christensen JH, Goeminne G, Halpin C, Rohde A, Morreel K, Boerjan W.

Plant Cell. 2012 Sep;24(9):3506-29. doi: 10.1105/tpc.112.102574. Epub 2012 Sep 25.

15.

Empirical comparison of cross-platform normalization methods for gene expression data.

Rudy J, Valafar F.

BMC Bioinformatics. 2011 Dec 7;12:467. doi: 10.1186/1471-2105-12-467.

16.

COLOMBOS: access port for cross-platform bacterial expression compendia.

Engelen K, Fu Q, Meysman P, Sánchez-Rodríguez A, De Smet R, Lemmens K, Fierro AC, Marchal K.

PLoS One. 2011;6(7):e20938. doi: 10.1371/journal.pone.0020938. Epub 2011 Jul 14.

17.

A tissue-specific landscape of sense/antisense transcription in the mouse intestine.

Klostermeier UC, Barann M, Wittig M, Häsler R, Franke A, Gavrilova O, Kreck B, Sina C, Schilhabel MB, Schreiber S, Rosenstiel P.

BMC Genomics. 2011 Jun 10;12:305. doi: 10.1186/1471-2164-12-305.

18.

Image defocus and altered retinal gene expression in chick: clues to the pathogenesis of ametropia.

Stone RA, McGlinn AM, Baldwin DA, Tobias JW, Iuvone PM, Khurana TS.

Invest Ophthalmol Vis Sci. 2011 Jul 29;52(8):5765-77. doi: 10.1167/iovs.10-6727.

19.

AnyExpress: integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm.

Kim J, Patel K, Jung H, Kuo WP, Ohno-Machado L.

BMC Bioinformatics. 2011 Mar 17;12:75. doi: 10.1186/1471-2105-12-75.

20.

Improved sensitivity of DNA microarrays using photonic crystal enhanced fluorescence.

Mathias PC, Jones SI, Wu HY, Yang F, Ganesh N, Gonzalez DO, Bollero G, Vodkin LO, Cunningham BT.

Anal Chem. 2010 Aug 15;82(16):6854-61. doi: 10.1021/ac100841d.

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