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Items: 1 to 20 of 57


Assessing in silico the recruitment and functional spectrum of bacterial enzymes from secondary metabolism.

Veprinskiy V, Heizinger L, Plach MG, Merkl R.

BMC Evol Biol. 2017 Jan 26;17(1):36. doi: 10.1186/s12862-017-0886-2.


Inferring Orthologs: Open Questions and Perspectives.

Tekaia F.

Genomics Insights. 2016 Feb 25;9:17-28. doi: 10.4137/GEI.S37925. Review.


Ortholog-Finder: A Tool for Constructing an Ortholog Data Set.

Horiike T, Minai R, Miyata D, Nakamura Y, Tateno Y.

Genome Biol Evol. 2016 Jan 18;8(2):446-57. doi: 10.1093/gbe/evw005.


An Effective Big Data Supervised Imbalanced Classification Approach for Ortholog Detection in Related Yeast Species.

Galpert D, Del Río S, Herrera F, Ancede-Gallardo E, Antunes A, Agüero-Chapin G.

Biomed Res Int. 2015;2015:748681. doi: 10.1155/2015/748681.


Exploiting the yeast stress-activated signaling network to inform on stress biology and disease signaling.

Ho YH, Gasch AP.

Curr Genet. 2015 Nov;61(4):503-11. doi: 10.1007/s00294-015-0491-0. Review.


Enrichment of Triticum aestivum gene annotations using ortholog cliques and gene ontologies in other plants.

Tulpan D, Leger S, Tchagang A, Pan Y.

BMC Genomics. 2015 Apr 15;16:299. doi: 10.1186/s12864-015-1496-2.


Bio and health informatics meets cloud : BioVLab as an example.

Chae H, Jung I, Lee H, Marru S, Lee SW, Kim S.

Health Inf Sci Syst. 2013 Feb 4;1:6. doi: 10.1186/2047-2501-1-6. Review.


A meta-approach for improving the prediction and the functional annotation of ortholog groups.

Pereira C, Denise A, Lespinet O.

BMC Genomics. 2014;15 Suppl 6:S16. doi: 10.1186/1471-2164-15-S6-S16.


An emerging mycoplasma associated with trichomoniasis, vaginal infection and disease.

Fettweis JM, Serrano MG, Huang B, Brooks JP, Glascock AL, Sheth NU; Vaginal Microbiome Consortium., Strauss JF 3rd, Jefferson KK, Buck GA.

PLoS One. 2014 Oct 22;9(10):e110943. doi: 10.1371/journal.pone.0110943.


Quickly finding orthologs as reciprocal best hits with BLAT, LAST, and UBLAST: how much do we miss?

Ward N, Moreno-Hagelsieb G.

PLoS One. 2014 Jul 11;9(7):e101850. doi: 10.1371/journal.pone.0101850.


Identification of putative ortholog gene blocks involved in gestant and lactating mammary gland development: a rodent cross-species microarray transcriptomics approach.

Rodríguez-Cruz M, Coral-Vázquez RM, Hernández-Stengele G, Sánchez R, Salazar E, Sanchez-Muñoz F, Encarnación-Guevara S, Ramírez-Salcedo J.

Int J Genomics. 2013;2013:624681. doi: 10.1155/2013/624681.


The complete genome sequence of the plant growth-promoting bacterium Pseudomonas sp. UW4.

Duan J, Jiang W, Cheng Z, Heikkila JJ, Glick BR.

PLoS One. 2013;8(3):e58640. doi: 10.1371/journal.pone.0058640.


Inferring hierarchical orthologous groups from orthologous gene pairs.

Altenhoff AM, Gil M, Gonnet GH, Dessimoz C.

PLoS One. 2013;8(1):e53786. doi: 10.1371/journal.pone.0053786.


A cross-species analysis method to analyze animal models' similarity to human's disease state.

Yu S, Zheng L, Li Y, Li C, Ma C, Li Y, Li X, Hao P.

BMC Syst Biol. 2012;6 Suppl 3:S18. doi: 10.1186/1752-0509-6-S3-S18.


Correlation of proteome-wide changes with social immunity behaviors provides insight into resistance to the parasitic mite, Varroa destructor, in the honey bee (Apis mellifera).

Parker R, Guarna MM, Melathopoulos AP, Moon KM, White R, Huxter E, Pernal SF, Foster LJ.

Genome Biol. 2012 Jun 29;13(9):R81. doi: 10.1186/gb-2012-13-9-r81.


Update on sumoylation: defining core components of the plant SUMO conjugation system by phylogenetic comparison.

Novatchkova M, Tomanov K, Hofmann K, Stuible HP, Bachmair A.

New Phytol. 2012 Jul;195(1):23-31. Review.


Convergent molecular evolution of genomic cores in Salmonella enterica and Escherichia coli.

Chattopadhyay S, Paul S, Kisiela DI, Linardopoulou EV, Sokurenko EV.

J Bacteriol. 2012 Sep;194(18):5002-11. doi: 10.1128/JB.00552-12.


Roundup 2.0: enabling comparative genomics for over 1800 genomes.

DeLuca TF, Cui J, Jung JY, St Gabriel KC, Wall DP.

Bioinformatics. 2012 Mar 1;28(5):715-6. doi: 10.1093/bioinformatics/bts006.


A vector space model approach to identify genetically related diseases.

Sarkar IN.

J Am Med Inform Assoc. 2012 Mar-Apr;19(2):249-54. doi: 10.1136/amiajnl-2011-000480.


Calculating orthologs in bacteria and Archaea: a divide and conquer approach.

Halachev MR, Loman NJ, Pallen MJ.

PLoS One. 2011;6(12):e28388. doi: 10.1371/journal.pone.0028388.

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