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Insights into enterotoxigenic Escherichia coli diversity in Bangladesh utilizing genomic epidemiology.

Sahl JW, Sistrunk JR, Baby NI, Begum Y, Luo Q, Sheikh A, Qadri F, Fleckenstein JM, Rasko DA.

Sci Rep. 2017 Jun 13;7(1):3402. doi: 10.1038/s41598-017-03631-x.


Whole genome re-sequencing to identify suppressor mutations of mutant and foreign Escherichia coli FtsZ.

Gardner KAJA, Osawa M, Erickson HP.

PLoS One. 2017 Apr 26;12(4):e0176643. doi: 10.1371/journal.pone.0176643. eCollection 2017.


A passive mutualistic interaction promotes the evolution of spatial structure within microbial populations.

Marchal M, Goldschmidt F, Derksen-Müller SN, Panke S, Ackermann M, Johnson DR.

BMC Evol Biol. 2017 Apr 24;17(1):106. doi: 10.1186/s12862-017-0950-y.


Unveiling the Hybrid Genome Structure of Escherichia coli RR1 (HB101 RecA+).

Jeong H, Sim YM, Kim HJ, Lee SJ.

Front Microbiol. 2017 Apr 4;8:585. doi: 10.3389/fmicb.2017.00585. eCollection 2017.


Acid Evolution of Escherichia coli K-12 Eliminates Amino Acid Decarboxylases and Reregulates Catabolism.

He A, Penix SR, Basting PJ, Griffith JM, Creamer KE, Camperchioli D, Clark MW, Gonzales AS, Chávez Erazo JS, George NS, Bhagwat AA, Slonczewski JL.

Appl Environ Microbiol. 2017 May 31;83(12). pii: e00442-17. doi: 10.1128/AEM.00442-17. Print 2017 Jun 15.


Genomic and transcriptomic landscape of Escherichia coli BL21(DE3).

Kim S, Jeong H, Kim EY, Kim JF, Lee SY, Yoon SH.

Nucleic Acids Res. 2017 May 19;45(9):5285-5293. doi: 10.1093/nar/gkx228.


Effects of Kasugamycin on the Translatome of Escherichia coli.

Lange C, Lehr M, Zerulla K, Ludwig P, Schweitzer J, Polen T, Wendisch VF, Soppa J.

PLoS One. 2017 Jan 12;12(1):e0168143. doi: 10.1371/journal.pone.0168143. eCollection 2017.


Characterization and Genomic Study of the Novel Bacteriophage HY01 Infecting Both Escherichia coli O157:H7 and Shigella flexneri: Potential as a Biocontrol Agent in Food.

Lee H, Ku HJ, Lee DH, Kim YT, Shin H, Ryu S, Lee JH.

PLoS One. 2016 Dec 30;11(12):e0168985. doi: 10.1371/journal.pone.0168985. eCollection 2016.


Differential Regulation of rRNA and tRNA Transcription from the rRNA-tRNA Composite Operon in Escherichia coli.

Takada H, Shimada T, Dey D, Quyyum MZ, Nakano M, Ishiguro A, Yoshida H, Yamamoto K, Sen R, Ishihama A.

PLoS One. 2016 Dec 22;11(12):e0163057. doi: 10.1371/journal.pone.0163057. eCollection 2016.


A Stress-Induced Bias in the Reading of the Genetic Code in Escherichia coli.

Oron-Gottesman A, Sauert M, Moll I, Engelberg-Kulka H.

MBio. 2016 Nov 15;7(6). pii: e01855-16. doi: 10.1128/mBio.01855-16.


Novel RpoS-Dependent Mechanisms Strengthen the Envelope Permeability Barrier during Stationary Phase.

Mitchell AM, Wang W, Silhavy TJ.

J Bacteriol. 2016 Dec 28;199(2). pii: e00708-16. doi: 10.1128/JB.00708-16. Print 2017 Jan 15.


Combining Genes from Multiple Phages for Improved Cell Lysis and DNA Transfer from Escherichia coli to Bacillus subtilis.

Juhas M, Wong C, Ajioka JW.

PLoS One. 2016 Oct 31;11(10):e0165778. doi: 10.1371/journal.pone.0165778. eCollection 2016.


Benzoate- and Salicylate-Tolerant Strains of Escherichia coli K-12 Lose Antibiotic Resistance during Laboratory Evolution.

Creamer KE, Ditmars FS, Basting PJ, Kunka KS, Hamdallah IN, Bush SP, Scott Z, He A, Penix SR, Gonzales AS, Eder EK, Camperchioli DW, Berndt A, Clark MW, Rouhier KA, Slonczewski JL.

Appl Environ Microbiol. 2016 Dec 30;83(2). pii: e02736-16. doi: 10.1128/AEM.02736-16. Print 2017 Jan 15.


High-specificity detection of rare alleles with Paired-End Low Error Sequencing (PELE-Seq).

Preston JL, Royall AE, Randel MA, Sikkink KL, Phillips PC, Johnson EA.

BMC Genomics. 2016 Jun 14;17:464. doi: 10.1186/s12864-016-2669-3.


Carriage of Extended-Spectrum Beta-Lactamase-Plasmids Does Not Reduce Fitness but Enhances Virulence in Some Strains of Pandemic E. coli Lineages.

Schaufler K, Semmler T, Pickard DJ, de Toro M, de la Cruz F, Wieler LH, Ewers C, Guenther S.

Front Microbiol. 2016 Mar 17;7:336. doi: 10.3389/fmicb.2016.00336. eCollection 2016.


How Archiving by Freezing Affects the Genome-Scale Diversity of Escherichia coli Populations.

Sprouffske K, Aguilar-Rodríguez J, Wagner A.

Genome Biol Evol. 2016 May 9;8(5):1290-8. doi: 10.1093/gbe/evw054.


The role of motility and chemotaxis in the bacterial colonization of protected surfaces.

Tamar E, Koler M, Vaknin A.

Sci Rep. 2016 Jan 21;6:19616. doi: 10.1038/srep19616.


Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing.

Stapleton JA, Kim J, Hamilton JP, Wu M, Irber LC, Maddamsetti R, Briney B, Newton L, Burton DR, Brown CT, Chan C, Buell CR, Whitehead TA.

PLoS One. 2016 Jan 20;11(1):e0147229. doi: 10.1371/journal.pone.0147229. eCollection 2016.


Strength and Regulation of Seven rRNA Promoters in Escherichia coli.

Maeda M, Shimada T, Ishihama A.

PLoS One. 2015 Dec 30;10(12):e0144697. doi: 10.1371/journal.pone.0144697. eCollection 2015.

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