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Items: 1 to 20 of 39

1.

Mutational Pleiotropy and the Strength of Stabilizing Selection Within and Between Functional Modules of Gene Expression.

Collet JM, McGuigan K, Allen SL, Chenoweth SF, Blows MW.

Genetics. 2018 Apr;208(4):1601-1616. doi: 10.1534/genetics.118.300776. Epub 2018 Feb 1.

PMID:
29437825
2.

Sugar Lego: gene composition of bacterial carbohydrate metabolism genomic loci.

Kaznadzey A, Shelyakin P, Gelfand MS.

Biol Direct. 2017 Nov 25;12(1):28. doi: 10.1186/s13062-017-0200-7.

3.

The alignment of enzymatic steps reveals similar metabolic pathways and probable recruitment events in Gammaproteobacteria.

Poot-Hernandez AC, Rodriguez-Vazquez K, Perez-Rueda E.

BMC Genomics. 2015 Nov 17;16:957. doi: 10.1186/s12864-015-2113-0.

4.
5.

Inactivation of metabolic genes causes short- and long-range dys-regulation in Escherichia coli metabolic network.

Barupal DK, Lee SJ, Karoly ED, Adhya S.

PLoS One. 2013 Dec 5;8(12):e78360. doi: 10.1371/journal.pone.0078360. eCollection 2013.

6.

Use of a global metabolic network to curate organismal metabolic networks.

Pah AR, Guimerà R, Mustoe AM, Amaral LA.

Sci Rep. 2013;3:1695. doi: 10.1038/srep01695.

7.

Downward causation by information control in micro-organisms.

Jaeger L, Calkins ER.

Interface Focus. 2012 Feb 6;2(1):26-41. doi: 10.1098/rsfs.2011.0045. Epub 2011 Sep 29.

8.

Hierarchical alteration of brain structural and functional networks in female migraine sufferers.

Liu J, Zhao L, Li G, Xiong S, Nan J, Li J, Yuan K, von Deneen KM, Liang F, Qin W, Tian J.

PLoS One. 2012;7(12):e51250. doi: 10.1371/journal.pone.0051250. Epub 2012 Dec 5.

9.

Uncovering the co-evolutionary network among prokaryotic genes.

Cohen O, Ashkenazy H, Burstein D, Pupko T.

Bioinformatics. 2012 Sep 15;28(18):i389-i394. doi: 10.1093/bioinformatics/bts396.

10.

Topological effects of data incompleteness of gene regulatory networks.

Sanz J, Cozzo E, Borge-Holthoefer J, Moreno Y.

BMC Syst Biol. 2012 Aug 25;6:110. doi: 10.1186/1752-0509-6-110.

11.

MetaMapp: mapping and visualizing metabolomic data by integrating information from biochemical pathways and chemical and mass spectral similarity.

Barupal DK, Haldiya PK, Wohlgemuth G, Kind T, Kothari SL, Pinkerton KE, Fiehn O.

BMC Bioinformatics. 2012 May 16;13:99.

12.

Exploring and challenging the network of angiogenesis.

Montañez R, Sánchez-Jiménez F, Quesada AR, Medina MÁ.

Sci Rep. 2011;1:61. doi: 10.1038/srep00061. Epub 2011 Aug 11.

13.

Identifying neighborhoods of coordinated gene expression and metabolite profiles.

Hancock T, Wicker N, Takigawa I, Mamitsuka H.

PLoS One. 2012;7(2):e31345. doi: 10.1371/journal.pone.0031345. Epub 2012 Feb 15.

14.

The emergence of modularity in biological systems.

Lorenz DM, Jeng A, Deem MW.

Phys Life Rev. 2011 Jun;8(2):129-60. doi: 10.1016/j.plrev.2011.02.003. Epub 2011 Feb 25. Review.

15.

Genome-wide discovery of missing genes in biological pathways of prokaryotes.

Chen Y, Mao F, Li G, Xu Y.

BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S1. doi: 10.1186/1471-2105-12-S1-S1.

16.

Module detection in complex networks using integer optimisation.

Xu G, Bennett L, Papageorgiou LG, Tsoka S.

Algorithms Mol Biol. 2010 Nov 12;5:36. doi: 10.1186/1748-7188-5-36.

17.

Evolution of metabolic network organization.

Mazurie A, Bonchev D, Schwikowski B, Buck GA.

BMC Syst Biol. 2010 May 11;4:59. doi: 10.1186/1752-0509-4-59.

18.

Circulating brain-derived neurotrophic factor and indices of metabolic and cardiovascular health: data from the Baltimore Longitudinal Study of Aging.

Golden E, Emiliano A, Maudsley S, Windham BG, Carlson OD, Egan JM, Driscoll I, Ferrucci L, Martin B, Mattson MP.

PLoS One. 2010 Apr 9;5(4):e10099. doi: 10.1371/journal.pone.0010099.

19.

Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways.

Mano A, Tuller T, Béjà O, Pinter RY.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S38. doi: 10.1186/1471-2105-11-S1-S38.

20.

Reconstructing ancestral gene content by coevolution.

Tuller T, Birin H, Gophna U, Kupiec M, Ruppin E.

Genome Res. 2010 Jan;20(1):122-32. doi: 10.1101/gr.096115.109. Epub 2009 Nov 30.

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