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Items: 1 to 20 of 69


The natural history of molecular functions inferred from an extensive phylogenomic analysis of gene ontology data.

Koç I, Caetano-Anollés G.

PLoS One. 2017 May 3;12(5):e0176129. doi: 10.1371/journal.pone.0176129. eCollection 2017.


Microorganisms-A Journal and a Unifying Concept for the Science of Microbiology.

Fuerst JA.

Microorganisms. 2014 Dec 12;2(4):140-6. doi: 10.3390/microorganisms2040140.


Horizontal gene transfer: essentiality and evolvability in prokaryotes, and roles in evolutionary transitions.

Koonin EV.

F1000Res. 2016 Jul 25;5. pii: F1000 Faculty Rev-1805. doi: 10.12688/f1000research.8737.1. eCollection 2016. Review.


Archaeal ancestors of eukaryotes: not so elusive any more.

Koonin EV.

BMC Biol. 2015 Oct 5;13:84. doi: 10.1186/s12915-015-0194-5.


Origin of eukaryotes from within archaea, archaeal eukaryome and bursts of gene gain: eukaryogenesis just made easier?

Koonin EV.

Philos Trans R Soc Lond B Biol Sci. 2015 Sep 26;370(1678):20140333. doi: 10.1098/rstb.2014.0333. Review.


Endosymbiotic theories for eukaryote origin.

Martin WF, Garg S, Zimorski V.

Philos Trans R Soc Lond B Biol Sci. 2015 Sep 26;370(1678):20140330. doi: 10.1098/rstb.2014.0330. Review.


The ring of life hypothesis for eukaryote origins is supported by multiple kinds of data.

McInerney J, Pisani D, O'Connell MJ.

Philos Trans R Soc Lond B Biol Sci. 2015 Sep 26;370(1678):20140323. doi: 10.1098/rstb.2014.0323. Review.


Eukaryotes first: how could that be?

Mariscal C, Doolittle WF.

Philos Trans R Soc Lond B Biol Sci. 2015 Sep 26;370(1678):20140322. doi: 10.1098/rstb.2014.0322. Review.


Changing ideas about eukaryotic origins.

Williams TA, Embley TM.

Philos Trans R Soc Lond B Biol Sci. 2015 Sep 26;370(1678):20140318. doi: 10.1098/rstb.2014.0318.


The universal tree of life: an update.

Forterre P.

Front Microbiol. 2015 Jul 21;6:717. doi: 10.3389/fmicb.2015.00717. eCollection 2015. Review.


Maternal ancestry and population history from whole mitochondrial genomes.

Kivisild T.

Investig Genet. 2015 Mar 10;6:3. doi: 10.1186/s13323-015-0022-2. eCollection 2015.


MitoCOGs: clusters of orthologous genes from mitochondria and implications for the evolution of eukaryotes.

Kannan S, Rogozin IB, Koonin EV.

BMC Evol Biol. 2014 Nov 25;14:237. doi: 10.1186/s12862-014-0237-5.


Primal eukaryogenesis: on the communal nature of precellular States, ancestral to modern life.

Egel R.

Life (Basel). 2012 Jan 23;2(1):170-212. doi: 10.3390/life2010170.


Conservation and variability of synaptonemal complex proteins in phylogenesis of eukaryotes.

Grishaeva TM, Bogdanov YF.

Int J Evol Biol. 2014;2014:856230. doi: 10.1155/2014/856230. Epub 2014 Jul 23.


The archaeal legacy of eukaryotes: a phylogenomic perspective.

Guy L, Saw JH, Ettema TJ.

Cold Spring Harb Perspect Biol. 2014 Jul 3;6(10):a016022. doi: 10.1101/cshperspect.a016022. Review.


The dispersed archaeal eukaryome and the complex archaeal ancestor of eukaryotes.

Koonin EV, Yutin N.

Cold Spring Harb Perspect Biol. 2014 Apr 1;6(4):a016188. doi: 10.1101/cshperspect.a016188. Review.


Global patterns of protein domain gain and loss in superkingdoms.

Nasir A, Kim KM, Caetano-Anollés G.

PLoS Comput Biol. 2014 Jan 30;10(1):e1003452. doi: 10.1371/journal.pcbi.1003452. eCollection 2014 Jan.


The common ancestor of archaea and eukarya was not an archaeon.

Forterre P.

Archaea. 2013;2013:372396. doi: 10.1155/2013/372396. Epub 2013 Nov 17. Review.


Close encounters of the third domain: the emerging genomic view of archaeal diversity and evolution.

Spang A, Martijn J, Saw JH, Lind AE, Guy L, Ettema TJ.

Archaea. 2013;2013:202358. doi: 10.1155/2013/202358. Epub 2013 Nov 19. Review.


Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages.

de Mendoza A, Sebé-Pedrós A, Šestak MS, Matejcic M, Torruella G, Domazet-Loso T, Ruiz-Trillo I.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):E4858-66. doi: 10.1073/pnas.1311818110. Epub 2013 Nov 25.

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