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Items: 14

1.

Using intron position conservation for homology-based gene prediction.

Keilwagen J, Wenk M, Erickson JL, Schattat MH, Grau J, Hartung F.

Nucleic Acids Res. 2016 May 19;44(9):e89. doi: 10.1093/nar/gkw092.

2.

Individual and population-level responses to ocean acidification.

Harvey BP, McKeown NJ, Rastrick SP, Bertolini C, Foggo A, Graham H, Hall-Spencer JM, Milazzo M, Shaw PW, Small DP, Moore PJ.

Sci Rep. 2016 Jan 29;6:20194. doi: 10.1038/srep20194.

3.

A universal genomic coordinate translator for comparative genomics.

Zamani N, Sundström G, Meadows JR, Höppner MP, Dainat J, Lantz H, Haas BJ, Grabherr MG.

BMC Bioinformatics. 2014 Jun 30;15:227. doi: 10.1186/1471-2105-15-227.

4.

GFF-Ex: a genome feature extraction package.

Rastogi A, Gupta D.

BMC Res Notes. 2014 May 24;7:315. doi: 10.1186/1756-0500-7-315.

5.

Genomic Porosity between Invasive Chondrostoma nasus and Endangered Endemic Parachondrostoma toxostoma (Cyprinidae): The Evolution of MHC IIB Genes.

Simková A, Civáňová K, Gettová L, Gilles A.

PLoS One. 2013 Jun 18;8(6):e65883. doi: 10.1371/journal.pone.0065883.

6.

Non-homogeneous combination of two porous genomes induces complex body shape trajectories in cyprinid hybrids.

Sinama M, Gilles A, Costedoat C, Corse E, Olivier JM, Chappaz R, Pech N.

Front Zool. 2013 May 1;10(1):22. doi: 10.1186/1742-9994-10-22.

7.

Ecological genetics of Chinese rhesus macaque in response to mountain building: all things are not equal.

Wu SJ, Luo J, Li QQ, Wang YQ, Murphy RW, Blair C, Wu SF, Yue BS, Zhang YP.

PLoS One. 2013;8(2):e55315. doi: 10.1371/journal.pone.0055315.

8.

Does invasive Chondrostoma nasus shift the parasite community structure of endemic Parachondrostoma toxostoma in sympatric zones?

Simková A, Navrátilová P, Dávidová M, Ondračková M, Sinama M, Chappaz R, Gilles A, Costedoat C.

Parasit Vectors. 2012 Sep 11;5:200. doi: 10.1186/1756-3305-5-200.

9.

Revisiting the missing protein-coding gene catalog of the domestic dog.

Derrien T, Thézé J, Vaysse A, André C, Ostrander EA, Galibert F, Hitte C.

BMC Genomics. 2009 Feb 4;10:62. doi: 10.1186/1471-2164-10-62.

10.

Reranking candidate gene models with cross-species comparison for improved gene prediction.

Liu Q, Crammer K, Pereira FC, Roos DS.

BMC Bioinformatics. 2008 Oct 14;9:433. doi: 10.1186/1471-2105-9-433.

11.
12.

Diverse molecular data demonstrate that commercially available medicinal leeches are not Hirudo medicinalis.

Siddall ME, Trontelj P, Utevsky SY, Nkamany M, Macdonald KS.

Proc Biol Sci. 2007 Jun 22;274(1617):1481-7.

13.

DroSpeGe: rapid access database for new Drosophila species genomes.

Gilbert DG.

Nucleic Acids Res. 2007 Jan;35(Database issue):D480-5.

14.

A computational approach for identifying pseudogenes in the ENCODE regions.

Zheng D, Gerstein MB.

Genome Biol. 2006;7 Suppl 1:S13.1-10.

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