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Items: 1 to 20 of 107

1.

Substantial contribution of genetic variation in the expression of transcription factors to phenotypic variation revealed by eRD-GWAS.

Lin HY, Liu Q, Li X, Yang J, Liu S, Huang Y, Scanlon MJ, Nettleton D, Schnable PS.

Genome Biol. 2017 Oct 17;18(1):192. doi: 10.1186/s13059-017-1328-6.

2.

Evolution of new regulatory functions on biophysically realistic fitness landscapes.

Friedlander T, Prizak R, Barton NH, Tkačik G.

Nat Commun. 2017 Aug 9;8(1):216. doi: 10.1038/s41467-017-00238-8.

3.

Hypoxia Inducible Factor (HIF) transcription factor family expansion, diversification, divergence and selection in eukaryotes.

Graham AM, Presnell JS.

PLoS One. 2017 Jun 14;12(6):e0179545. doi: 10.1371/journal.pone.0179545. eCollection 2017.

4.

Evolution of transcript modification by N6-methyladenosine in primates.

Ma L, Zhao B, Chen K, Thomas A, Tuteja JH, He X, He C, White KP.

Genome Res. 2017 Mar;27(3):385-392. doi: 10.1101/gr.212563.116. Epub 2017 Jan 4.

5.

Enhancer Runaway and the Evolution of Diploid Gene Expression.

Fyon F, Cailleau A, Lenormand T.

PLoS Genet. 2015 Nov 12;11(11):e1005665. doi: 10.1371/journal.pgen.1005665. eCollection 2015 Nov.

6.

Phylogenetic ANOVA: The Expression Variance and Evolution Model for Quantitative Trait Evolution.

Rohlfs RV, Nielsen R.

Syst Biol. 2015 Sep;64(5):695-708. doi: 10.1093/sysbio/syv042. Epub 2015 Jul 13.

7.

Tissue-Specific Evolution of Protein Coding Genes in Human and Mouse.

Kryuchkova-Mostacci N, Robinson-Rechavi M.

PLoS One. 2015 Jun 29;10(6):e0131673. doi: 10.1371/journal.pone.0131673. eCollection 2015.

8.

Identification of Lineage-Specific Cis-Regulatory Modules Associated with Variation in Transcription Factor Binding and Chromatin Activity Using Ornstein-Uhlenbeck Models.

Naval-Sánchez M, Potier D, Hulselmans G, Christiaens V, Aerts S.

Mol Biol Evol. 2015 Sep;32(9):2441-55. doi: 10.1093/molbev/msv107. Epub 2015 May 4.

9.

The genetic architecture of gene expression levels in wild baboons.

Tung J, Zhou X, Alberts SC, Stephens M, Gilad Y.

Elife. 2015 Feb 25;4. doi: 10.7554/eLife.04729.

10.

Epigenetic and genetic alterations affect the WWOX gene in head and neck squamous cell carcinoma.

Ekizoglu S, Bulut P, Karaman E, Kilic E, Buyru N.

PLoS One. 2015 Jan 22;10(1):e0115353. doi: 10.1371/journal.pone.0115353. eCollection 2015.

11.

The genetic and mechanistic basis for variation in gene regulation.

Pai AA, Pritchard JK, Gilad Y.

PLoS Genet. 2015 Jan 8;11(1):e1004857. doi: 10.1371/journal.pgen.1004857. eCollection 2015 Jan.

12.

Gene age predicts the strength of purifying selection acting on gene expression variation in humans.

Popadin KY, Gutierrez-Arcelus M, Lappalainen T, Buil A, Steinberg J, Nikolaev SI, Lukowski SW, Bazykin GA, Seplyarskiy VB, Ioannidis P, Zdobnov EM, Dermitzakis ET, Antonarakis SE.

Am J Hum Genet. 2014 Dec 4;95(6):660-74. doi: 10.1016/j.ajhg.2014.11.003.

13.

Epigenetic modifications are associated with inter-species gene expression variation in primates.

Zhou X, Cain CE, Myrthil M, Lewellen N, Michelini K, Davenport ER, Stephens M, Pritchard JK, Gilad Y.

Genome Biol. 2014;15(12):547.

14.

The evolution and adaptive potential of transcriptional variation in sticklebacks--signatures of selection and widespread heritability.

Leder EH, McCairns RJ, Leinonen T, Cano JM, Viitaniemi HM, Nikinmaa M, Primmer CR, Merilä J.

Mol Biol Evol. 2015 Mar;32(3):674-89. doi: 10.1093/molbev/msu328. Epub 2014 Nov 25.

15.

Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR).

Peng X, Thierry-Mieg J, Thierry-Mieg D, Nishida A, Pipes L, Bozinoski M, Thomas MJ, Kelly S, Weiss JM, Raveendran M, Muzny D, Gibbs RA, Rogers J, Schroth GP, Katze MG, Mason CE.

Nucleic Acids Res. 2015 Jan;43(Database issue):D737-42. doi: 10.1093/nar/gku1110. Epub 2014 Nov 11.

16.

Comparative studies of gene regulatory mechanisms.

Pai AA, Gilad Y.

Curr Opin Genet Dev. 2014 Dec;29:68-74. doi: 10.1016/j.gde.2014.08.010. Epub 2014 Sep 16. Review.

17.

Comparative metabolomics in primates reveals the effects of diet and gene regulatory variation on metabolic divergence.

Blekhman R, Perry GH, Shahbaz S, Fiehn O, Clark AG, Gilad Y.

Sci Rep. 2014 Jul 28;4:5809. doi: 10.1038/srep05809.

18.

WWOX at the crossroads of cancer, metabolic syndrome related traits and CNS pathologies.

Aldaz CM, Ferguson BW, Abba MC.

Biochim Biophys Acta. 2014 Aug;1846(1):188-200. doi: 10.1016/j.bbcan.2014.06.001. Epub 2014 Jun 14. Review.

19.

Tempo and mode of regulatory evolution in Drosophila.

Coolon JD, McManus CJ, Stevenson KR, Graveley BR, Wittkopp PJ.

Genome Res. 2014 May;24(5):797-808. doi: 10.1101/gr.163014.113. Epub 2014 Feb 24.

20.

Analysis of synaptic gene expression in the neocortex of primates reveals evolutionary changes in glutamatergic neurotransmission.

Muntané G, Horvath JE, Hof PR, Ely JJ, Hopkins WD, Raghanti MA, Lewandowski AH, Wray GA, Sherwood CC.

Cereb Cortex. 2015 Jun;25(6):1596-607. doi: 10.1093/cercor/bht354. Epub 2014 Jan 9.

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