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Items: 11

1.

Formaldehyde-Assisted Isolation of Regulatory Elements (FAIRE) analysis uncovers broad changes in chromatin structure resulting from hexavalent chromium exposure.

Ovesen JL, Fan Y, Zhang X, Chen J, Medvedovic M, Xia Y, Puga A.

PLoS One. 2014 May 16;9(5):e97849. doi: 10.1371/journal.pone.0097849. eCollection 2014.

2.

Genome-wide incorporation dynamics reveal distinct categories of turnover for the histone variant H3.3.

Kraushaar DC, Jin W, Maunakea A, Abraham B, Ha M, Zhao K.

Genome Biol. 2013;14(10):R121. Erratum in: Genome Biol. 2016;17:21.

3.

A generalized hidden Markov model for determining sequence-based predictors of nucleosome positioning.

Moser C, Gupta M.

Stat Appl Genet Mol Biol. 2012 Jan 6;11(2). pii: /j/sagmb.2012.11.issue-2/1544-6115.1707/1544-6115.1707.xml. doi: 10.2202/1544-6115.1707.

4.

Charge state of the globular histone core controls stability of the nucleosome.

Fenley AT, Adams DA, Onufriev AV.

Biophys J. 2010 Sep 8;99(5):1577-85. doi: 10.1016/j.bpj.2010.06.046.

5.

Ubiquitination of histone H2B regulates chromatin dynamics by enhancing nucleosome stability.

Chandrasekharan MB, Huang F, Sun ZW.

Proc Natl Acad Sci U S A. 2009 Sep 29;106(39):16686-91. doi: 10.1073/pnas.0907862106. Epub 2009 Sep 10.

6.

Kinetic proofreading of gene activation by chromatin remodeling.

Blossey R, Schiessel H.

HFSP J. 2008 Jun;2(3):167-70. doi: 10.2976/1.2909080. Epub 2008 Apr 22.

7.

Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae.

Hershman SG, Chen Q, Lee JY, Kozak ML, Yue P, Wang LS, Johnson FB.

Nucleic Acids Res. 2008 Jan;36(1):144-56. Epub 2007 Nov 13.

8.

Sequence-dependent variations associated with H2A/H2B depletion of nucleosomes.

Kelbauskas L, Chan N, Bash R, DeBartolo P, Sun J, Woodbury N, Lohr D.

Biophys J. 2008 Jan 1;94(1):147-58. Epub 2007 Oct 12.

9.

Functional constraint and small insertions and deletions in the ENCODE regions of the human genome.

Clark TG, Andrew T, Cooper GM, Margulies EH, Mullikin JC, Balding DJ.

Genome Biol. 2007;8(9):R180.

10.

The RNA polymerase II kinase Ctk1 regulates positioning of a 5' histone methylation boundary along genes.

Xiao T, Shibata Y, Rao B, Laribee RN, O'Rourke R, Buck MJ, Greenblatt JF, Krogan NJ, Lieb JD, Strahl BD.

Mol Cell Biol. 2007 Jan;27(2):721-31. Epub 2006 Nov 6.

11.

Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters.

Hogan GJ, Lee CK, Lieb JD.

PLoS Genet. 2006 Sep 22;2(9):e158. Epub 2006 Aug 8.

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