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Rpn (YhgA-Like) Proteins of Escherichia coli K-12 and Their Contribution to RecA-Independent Horizontal Transfer.

Kingston AW, Ponkratz C, Raleigh EA.

J Bacteriol. 2017 Mar 14;199(7). pii: e00787-16. doi: 10.1128/JB.00787-16. Print 2017 Apr 1.


Restriction endonuclease AgeI is a monomer which dimerizes to cleave DNA.

Tamulaitiene G, Jovaisaite V, Tamulaitis G, Songailiene I, Manakova E, Zaremba M, Grazulis S, Xu SY, Siksnys V.

Nucleic Acids Res. 2017 Apr 7;45(6):3547-3558. doi: 10.1093/nar/gkw1310.


Implication of Terminal Residues at Protein-Protein and Protein-DNA Interfaces.

Martin OM, Etheve L, Launay G, Martin J.

PLoS One. 2016 Sep 9;11(9):e0162143. doi: 10.1371/journal.pone.0162143. eCollection 2016.


Crystal structure of Thermobifida fusca Cse1 reveals target DNA binding site.

Tay M, Liu S, Yuan YA.

Protein Sci. 2015 Feb;24(2):236-45. doi: 10.1002/pro.2609. Epub 2014 Dec 26.


Structure of 5-hydroxymethylcytosine-specific restriction enzyme, AbaSI, in complex with DNA.

Horton JR, Borgaro JG, Griggs RM, Quimby A, Guan S, Zhang X, Wilson GG, Zheng Y, Zhu Z, Cheng X.

Nucleic Acids Res. 2014 Jul;42(12):7947-59. doi: 10.1093/nar/gku497. Epub 2014 Jun 3.


Type II restriction endonucleases--a historical perspective and more.

Pingoud A, Wilson GG, Wende W.

Nucleic Acids Res. 2014 Jul;42(12):7489-527. doi: 10.1093/nar/gku447. Epub 2014 May 30. Review. Erratum in: Nucleic Acids Res. 2016 Sep 19;44(16):8011.


Bioinformatic analysis of the protein/DNA interface.

Schneider B, Cerný J, Svozil D, Cech P, Gelly JC, de Brevern AG.

Nucleic Acids Res. 2014 Mar;42(5):3381-94. doi: 10.1093/nar/gkt1273. Epub 2013 Dec 11.


A tandem chemoenzymatic methylation by S-adenosyl-L-methionine.

Lipson JM, Thomsen M, Moore BS, Clausen RP, La Clair JJ, Burkart MD.

Chembiochem. 2013 May 27;14(8):950-3. doi: 10.1002/cbic.201300221. Epub 2013 May 6.


Structure and cleavage activity of the tetrameric MspJI DNA modification-dependent restriction endonuclease.

Horton JR, Mabuchi MY, Cohen-Karni D, Zhang X, Griggs RM, Samaranayake M, Roberts RJ, Zheng Y, Cheng X.

Nucleic Acids Res. 2012 Oct;40(19):9763-73. doi: 10.1093/nar/gks719. Epub 2012 Jul 30.


Mechanism of foreign DNA selection in a bacterial adaptive immune system.

Sashital DG, Wiedenheft B, Doudna JA.

Mol Cell. 2012 Jun 8;46(5):606-15. doi: 10.1016/j.molcel.2012.03.020. Epub 2012 Apr 19.


Target site cleavage by the monomeric restriction enzyme BcnI requires translocation to a random DNA sequence and a switch in enzyme orientation.

Sasnauskas G, Kostiuk G, Tamulaitis G, Siksnys V.

Nucleic Acids Res. 2011 Nov 1;39(20):8844-56. doi: 10.1093/nar/gkr588. Epub 2011 Jul 19.


Degenerate sequence recognition by the monomeric restriction enzyme: single mutation converts BcnI into a strand-specific nicking endonuclease.

Kostiuk G, Sasnauskas G, Tamulaitiene G, Siksnys V.

Nucleic Acids Res. 2011 May;39(9):3744-53. doi: 10.1093/nar/gkq1351. Epub 2011 Jan 11.


DNA intercalation without flipping in the specific ThaI-DNA complex.

Firczuk M, Wojciechowski M, Czapinska H, Bochtler M.

Nucleic Acids Res. 2011 Jan;39(2):744-54. doi: 10.1093/nar/gkq834. Epub 2010 Sep 21.


The type II restriction endonuclease MvaI has dual specificity.

Stier I, Kiss A.

Nucleic Acids Res. 2010 Dec;38(22):8231-8. doi: 10.1093/nar/gkq676. Epub 2010 Aug 6.


BspRI restriction endonuclease: cloning, expression in Escherichia coli and sequential cleavage mechanism.

Raskó T, Dér A, Klement E, Slaska-Kiss K, Pósfai E, Medzihradszky KF, Marshak DR, Roberts RJ, Kiss A.

Nucleic Acids Res. 2010 Nov;38(20):7155-66. doi: 10.1093/nar/gkq567. Epub 2010 Jun 29.


Targeting individual subunits of the FokI restriction endonuclease to specific DNA strands.

Sanders KL, Catto LE, Bellamy SR, Halford SE.

Nucleic Acids Res. 2009 Apr;37(7):2105-15. doi: 10.1093/nar/gkp046. Epub 2009 Feb 17.


Mechanism of MutS searching for DNA mismatches and signaling repair.

Tessmer I, Yang Y, Zhai J, Du C, Hsieh P, Hingorani MM, Erie DA.

J Biol Chem. 2008 Dec 26;283(52):36646-54. doi: 10.1074/jbc.M805712200. Epub 2008 Oct 14.


Quantitative analyses of RAG-RSS interactions and conformations revealed by atomic force microscopy.

Pavlicek JW, Lyubchenko YL, Chang Y.

Biochemistry. 2008 Oct 28;47(43):11204-11. doi: 10.1021/bi801426x. Epub 2008 Oct 3.


Conformational dynamics of an intact virus: order parameters for the coat protein of Pf1 bacteriophage.

Lorieau JL, Day LA, McDermott AE.

Proc Natl Acad Sci U S A. 2008 Jul 29;105(30):10366-71. doi: 10.1073/pnas.0800405105. Epub 2008 Jul 24.

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