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Items: 1 to 20 of 49

1.

A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems.

Budinich M, Bourdon J, Larhlimi A, Eveillard D.

PLoS One. 2017 Feb 10;12(2):e0171744. doi: 10.1371/journal.pone.0171744. eCollection 2017.

PMID:
28187207
2.

Concerted Up-regulation of Aldehyde/Alcohol Dehydrogenase (ADHE) and Starch in Chlamydomonas reinhardtii Increases Survival under Dark Anoxia.

van Lis R, Popek M, Couté Y, Kosta A, Drapier D, Nitschke W, Atteia A.

J Biol Chem. 2017 Feb 10;292(6):2395-2410. doi: 10.1074/jbc.M116.766048. Epub 2016 Dec 22.

PMID:
28007962
3.

Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers.

Davison M, Treangen TJ, Koren S, Pop M, Bhaya D.

PLoS One. 2016 Sep 9;11(9):e0160574. doi: 10.1371/journal.pone.0160574. eCollection 2016.

PMID:
27611571
4.

Taxonomic and Functional Metagenomic Signature of Turfs in the Abrolhos Reef System (Brazil).

Walter JM, Tschoeke DA, Meirelles PM, de Oliveira L, Leomil L, Tenório M, Valle R, Salomon PS, Thompson CC, Thompson FL.

PLoS One. 2016 Aug 22;11(8):e0161168. doi: 10.1371/journal.pone.0161168. eCollection 2016.

PMID:
27548380
5.

In Situ Hydrogen Dynamics in a Hot Spring Microbial Mat during a Diel Cycle.

Revsbech NP, Trampe E, Lichtenberg M, Ward DM, Kühl M.

Appl Environ Microbiol. 2016 Jun 30;82(14):4209-17. doi: 10.1128/AEM.00710-16. Print 2016 Jul 15.

PMID:
27208140
6.

Tiny Microbes with a Big Impact: The Role of Cyanobacteria and Their Metabolites in Shaping Our Future.

Mazard S, Penesyan A, Ostrowski M, Paulsen IT, Egan S.

Mar Drugs. 2016 May 17;14(5). pii: E97. doi: 10.3390/md14050097. Review.

PMID:
27196915
7.

The cyanobacterium Mastigocladus fulfills the nitrogen demand of a terrestrial hot spring microbial mat.

Estrella Alcamán M, Fernandez C, Delgado A, Bergman B, Díez B.

ISME J. 2015 Oct;9(10):2290-303. doi: 10.1038/ismej.2015.63. Epub 2015 Jul 31.

PMID:
26230049
8.

The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat.

Olsen MT, Nowack S, Wood JM, Becraft ED, LaButti K, Lipzen A, Martin J, Schackwitz WS, Rusch DB, Cohan FM, Bryant DA, Ward DM.

Front Microbiol. 2015 Jun 23;6:604. doi: 10.3389/fmicb.2015.00604. eCollection 2015.

PMID:
26157428
9.

Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms.

Kim YM, Nowack S, Olsen MT, Becraft ED, Wood JM, Thiel V, Klapper I, Kühl M, Fredrickson JK, Bryant DA, Ward DM, Metz TO.

Front Microbiol. 2015 Apr 17;6:209. doi: 10.3389/fmicb.2015.00209. eCollection 2015.

PMID:
25941514
10.

Evolutionary Aspects and Regulation of Tetrapyrrole Biosynthesis in Cyanobacteria under Aerobic and Anaerobic Environments.

Fujita Y, Tsujimoto R, Aoki R.

Life (Basel). 2015 Mar 30;5(2):1172-203. doi: 10.3390/life5021172. Review.

PMID:
25830590
11.

High dissolved organic carbon release by benthic cyanobacterial mats in a Caribbean reef ecosystem.

Brocke HJ, Wenzhoefer F, de Beer D, Mueller B, van Duyl FC, Nugues MM.

Sci Rep. 2015 Mar 9;5:8852. doi: 10.1038/srep08852.

PMID:
25747523
12.

Portrait of a Geothermal Spring, Hunter's Hot Springs, Oregon.

Castenholz RW.

Life (Basel). 2015 Jan 27;5(1):332-47. doi: 10.3390/life5010332. Review.

PMID:
25633225
13.

Powerful fermentative hydrogen evolution of photosynthate in the cyanobacterium Lyngbya aestuarii BL J mediated by a bidirectional hydrogenase.

Kothari A, Parameswaran P, Garcia-Pichel F.

Front Microbiol. 2014 Dec 10;5:680. doi: 10.3389/fmicb.2014.00680. eCollection 2014.

PMID:
25540642
14.

Alternative acetate production pathways in Chlamydomonas reinhardtii during dark anoxia and the dominant role of chloroplasts in fermentative acetate production.

Yang W, Catalanotti C, D'Adamo S, Wittkopp TM, Ingram-Smith CJ, Mackinder L, Miller TE, Heuberger AL, Peers G, Smith KS, Jonikas MC, Grossman AR, Posewitz MC.

Plant Cell. 2014 Nov;26(11):4499-518. doi: 10.1105/tpc.114.129965. Epub 2014 Nov 7.

PMID:
25381350
15.

Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria.

Rodionova IA, Li X, Thiel V, Stolyar S, Stanton K, Fredrickson JK, Bryant DA, Osterman AL, Best AA, Rodionov DA.

Front Microbiol. 2013 Dec 23;4:407. doi: 10.3389/fmicb.2013.00407. eCollection 2013.

PMID:
24391637
16.

Role of polyphosphate in thermophilic Synechococcus sp. from microbial mats.

Gomez-Garcia MR, Fazeli F, Grote A, Grossman AR, Bhaya D.

J Bacteriol. 2013 Aug;195(15):3309-19. doi: 10.1128/JB.00207-13. Epub 2013 May 17.

PMID:
23687278
17.

Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring.

Klatt CG, Liu Z, Ludwig M, Kühl M, Jensen SI, Bryant DA, Ward DM.

ISME J. 2013 Sep;7(9):1775-89. doi: 10.1038/ismej.2013.52. Epub 2013 Apr 11.

PMID:
23575369
18.

Variations in the rhythms of respiration and nitrogen fixation in members of the unicellular diazotrophic cyanobacterial genus Cyanothece.

Bandyopadhyay A, Elvitigala T, Liberton M, Pakrasi HB.

Plant Physiol. 2013 Mar;161(3):1334-46. doi: 10.1104/pp.112.208231. Epub 2012 Dec 28.

PMID:
23274238
19.

Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics.

Burow LC, Woebken D, Marshall IP, Lindquist EA, Bebout BM, Prufert-Bebout L, Hoehler TM, Tringe SG, Pett-Ridge J, Weber PK, Spormann AM, Singer SW.

ISME J. 2013 Apr;7(4):817-29. doi: 10.1038/ismej.2012.150. Epub 2012 Nov 29.

PMID:
23190731
20.

Gene copy number variation and its significance in cyanobacterial phylogeny.

Schirrmeister BE, Dalquen DA, Anisimova M, Bagheri HC.

BMC Microbiol. 2012 Aug 15;12:177. doi: 10.1186/1471-2180-12-177.

PMID:
22894826

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