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Dynamics of the discovery process of protein-protein interactions from low content studies.

Wang Z, Clark NR, Ma'ayan A.

BMC Syst Biol. 2015 Jun 6;9:26. doi: 10.1186/s12918-015-0173-z.


Prediction of protein-protein interactions related to protein complexes based on protein interaction networks.

Liu P, Yang L, Shi D, Tang X.

Biomed Res Int. 2015;2015:259157. doi: 10.1155/2015/259157. Epub 2015 Feb 3.


Finding trans-regulatory genes and protein complexes modulating meiotic recombination hotspots of human, mouse and yeast.

Wu M, Kwoh CK, Li X, Zheng J.

BMC Syst Biol. 2014 Sep 11;8:107. doi: 10.1186/s12918-014-0107-1.


Homology-based prediction of interactions between proteins using Averaged One-Dependence Estimators.

Murakami Y, Mizuguchi K.

BMC Bioinformatics. 2014 Jun 23;15:213. doi: 10.1186/1471-2105-15-213.


Protein-protein interactions prediction based on iterative clique extension with gene ontology filtering.

Yang L, Tang X.

ScientificWorldJournal. 2014 Jan 22;2014:523634. doi: 10.1155/2014/523634. eCollection 2014.


Clustering cliques for graph-based summarization of the biomedical research literature.

Zhang H, Fiszman M, Shin D, Wilkowski B, Rindflesch TC.

BMC Bioinformatics. 2013 Jun 7;14:182. doi: 10.1186/1471-2105-14-182.


A knowledge-based decision support system in bioinformatics: an application to protein complex extraction.

Fiannaca A, La Rosa M, Urso A, Rizzo R, Gaglio S.

BMC Bioinformatics. 2013;14 Suppl 1:S5. doi: 10.1186/1471-2105-14-S1-S5. Epub 2013 Jan 14.


Supervised maximum-likelihood weighting of composite protein networks for complex prediction.

Yong CH, Liu G, Chua HN, Wong L.

BMC Syst Biol. 2012;6 Suppl 2:S13. doi: 10.1186/1752-0509-6-S2-S13. Epub 2012 Dec 12.


Cluster-based assessment of protein-protein interaction confidence.

Kamburov A, Grossmann A, Herwig R, Stelzl U.

BMC Bioinformatics. 2012 Oct 10;13:262. doi: 10.1186/1471-2105-13-262.


A network-based approach for predicting missing pathway interactions.

Navlakha S, Gitter A, Bar-Joseph Z.

PLoS Comput Biol. 2012;8(8):e1002640. doi: 10.1371/journal.pcbi.1002640. Epub 2012 Aug 16.


Genes2FANs: connecting genes through functional association networks.

Dannenfelser R, Clark NR, Ma'ayan A.

BMC Bioinformatics. 2012 Jul 2;13:156. doi: 10.1186/1471-2105-13-156.


Modularity analysis based on predicted protein-protein interactions provides new insights into pathogenicity and cellular process of Escherichia coli O157:H7.

Wang X, Yue J, Ren X, Wang Y, Tan M, Li B, Liang L.

Theor Biol Med Model. 2011 Dec 22;8:47. doi: 10.1186/1742-4682-8-47.


Introduction to network analysis in systems biology.

Ma'ayan A.

Sci Signal. 2011 Sep 6;4(190):tr5. doi: 10.1126/scisignal.2001965.


Content disputes in Wikipedia reflect geopolitical instability.

Apic G, Betts MJ, Russell RB.

PLoS One. 2011;6(6):e20902. doi: 10.1371/journal.pone.0020902. Epub 2011 Jun 22.


Integrative computational biology for cancer research.

Fortney K, Jurisica I.

Hum Genet. 2011 Oct;130(4):465-81. doi: 10.1007/s00439-011-0983-z. Epub 2011 Apr 22. Review.


Global geometric affinity for revealing high fidelity protein interaction network.

Fang Y, Benjamin W, Sun M, Ramani K.

PLoS One. 2011 May 3;6(5):e19349. doi: 10.1371/journal.pone.0019349.


Recent advances in clustering methods for protein interaction networks.

Wang J, Li M, Deng Y, Pan Y.

BMC Genomics. 2010 Dec 1;11 Suppl 3:S10. doi: 10.1186/1471-2164-11-S3-S10.


Predicting domain-domain interaction based on domain profiles with feature selection and support vector machines.

González AJ, Liao L.

BMC Bioinformatics. 2010 Oct 29;11:537. doi: 10.1186/1471-2105-11-537.


Robustness and evolvability in natural chemical resistance: identification of novel systems properties, biochemical mechanisms and regulatory interactions.

Venancio TM, Balaji S, Geetha S, Aravind L.

Mol Biosyst. 2010 Aug;6(8):1475-91. doi: 10.1039/c002567b. Epub 2010 Jun 2.

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