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Items: 1 to 20 of 89


Identification of constraints influencing the bacterial genomes evolution in the PVC super-phylum.

Pinos S, Pontarotti P, Raoult D, Merhej V.

BMC Evol Biol. 2017 Mar 9;17(1):75. doi: 10.1186/s12862-017-0921-3.


SICLE: a high-throughput tool for extracting evolutionary relationships from phylogenetic trees.

DeBlasio DF, Wisecaver JH.

PeerJ. 2016 Aug 23;4:e2359. doi: 10.7717/peerj.2359. eCollection 2016.


Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology.

Pinhassi J, DeLong EF, Béjà O, González JM, Pedrós-Alió C.

Microbiol Mol Biol Rev. 2016 Sep 14;80(4):929-54. doi: 10.1128/MMBR.00003-16. Print 2016 Dec. Review.


Phylogeography, Salinity Adaptations and Metabolic Potential of the Candidate Division KB1 Bacteria Based on a Partial Single Cell Genome.

Nigro LM, Hyde AS, MacGregor BJ, Teske A.

Front Microbiol. 2016 Aug 22;7:1266. doi: 10.3389/fmicb.2016.01266. eCollection 2016.


Genome Analysis of a New Rhodothermaceae Strain Isolated from a Hot Spring.

Goh KM, Chan KG, Lim SW, Liew KJ, Chan CS, Shamsir MS, Ee R, Adrian TG.

Front Microbiol. 2016 Jul 14;7:1109. doi: 10.3389/fmicb.2016.01109. eCollection 2016.


Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines.

Vavourakis CD, Ghai R, Rodriguez-Valera F, Sorokin DY, Tringe SG, Hugenholtz P, Muyzer G.

Front Microbiol. 2016 Feb 25;7:211. doi: 10.3389/fmicb.2016.00211. eCollection 2016.


Interactions between closely related bacterial strains are revealed by deep transcriptome sequencing.

González-Torres P, Pryszcz LP, Santos F, Martínez-García M, Gabaldón T, Antón J.

Appl Environ Microbiol. 2015 Dec;81(24):8445-56. doi: 10.1128/AEM.02690-15. Epub 2015 Oct 2.


Genome Sequence and Transcriptome Analyses of Chrysochromulina tobin: Metabolic Tools for Enhanced Algal Fitness in the Prominent Order Prymnesiales (Haptophyceae).

Hovde BT, Deodato CR, Hunsperger HM, Ryken SA, Yost W, Jha RK, Patterson J, Monnat RJ Jr, Barlow SB, Starkenburg SR, Cattolico RA.

PLoS Genet. 2015 Sep 23;11(9):e1005469. doi: 10.1371/journal.pgen.1005469. eCollection 2015.


High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1(T) (DSM 17521(T)) isolated from muddy waters of a drainage system in Chandigarh, India.

Mukherjee S, Lapidus A, Shapiro N, Cheng JF, Han J, Reddy T, Huntemann M, Ivanova N, Mikhailova N, Chen A, Palaniappan K, Spring S, Göker M, Markowitz V, Woyke T, Tindall BJ, Klenk HP, Kyrpides NC, Pati A.

Stand Genomic Sci. 2015 Feb 9;10:8. doi: 10.1186/1944-3277-10-8. eCollection 2015.


Winter diversity and expression of proteorhodopsin genes in a polar ocean.

Nguyen D, Maranger R, Balagué V, Coll-Lladó M, Lovejoy C, Pedrós-Alió C.

ISME J. 2015 Aug;9(8):1835-45. doi: 10.1038/ismej.2015.1. Epub 2015 Feb 20.


Light-promoted rhodopsin expression and starvation survival in the marine dinoflagellate Oxyrrhis marina.

Guo Z, Zhang H, Lin S.

PLoS One. 2014 Dec 15;9(12):e114941. doi: 10.1371/journal.pone.0114941. eCollection 2014.


Dissection of hexosyl- and sialyltransferase domains in the bifunctional capsule polymerases from Neisseria meningitidis W and Y defines a new sialyltransferase family.

Romanow A, Keys TG, Stummeyer K, Freiberger F, Henrissat B, Gerardy-Schahn R.

J Biol Chem. 2014 Dec 5;289(49):33945-57. doi: 10.1074/jbc.M114.597773. Epub 2014 Oct 23.


Draft Genome Sequence of the Extremely Halophilic Phototrophic Purple Sulfur Bacterium Halorhodospira halochloris.

Singh KS, Kirksey J, Hoff WD, Deole R.

J Genomics. 2014 Jul 6;2:118-20. doi: 10.7150/jgen.9123. eCollection 2014.


Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake.

Gorriti MF, Dias GM, Chimetto LA, Trindade-Silva AE, Silva BS, Mesquita MM, Gregoracci GB, Farias ME, Thompson CC, Thompson FL.

BMC Genomics. 2014 Jun 13;15:473. doi: 10.1186/1471-2164-15-473.


An experimental point of view on hydration/solvation in halophilic proteins.

Talon R, Coquelle N, Madern D, Girard E.

Front Microbiol. 2014 Feb 21;5:66. doi: 10.3389/fmicb.2014.00066. eCollection 2014.


Characterization of cleavage intermediate and star sites of RM.Tth111II.

Zhu Z, Guan S, Robinson D, El Fezzazi H, Quimby A, Xu SY.

Sci Rep. 2014 Jan 23;4:3838. doi: 10.1038/srep03838.


Charge segregation and low hydrophobicity are key features of ribosomal proteins from different organisms.

Fedyukina DV, Jennaro TS, Cavagnero S.

J Biol Chem. 2014 Mar 7;289(10):6740-50. doi: 10.1074/jbc.M113.507707. Epub 2014 Jan 7.


The futalosine pathway played an important role in menaquinone biosynthesis during early prokaryote evolution.

Zhi XY, Yao JC, Tang SK, Huang Y, Li HW, Li WJ.

Genome Biol Evol. 2014 Jan;6(1):149-60. doi: 10.1093/gbe/evu007.


Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

Ernst OP, Lodowski DT, Elstner M, Hegemann P, Brown LS, Kandori H.

Chem Rev. 2014 Jan 8;114(1):126-63. doi: 10.1021/cr4003769. Epub 2013 Dec 23. Review. No abstract available.

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