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Upstream Freshwater and Terrestrial Sources Are Differentially Reflected in the Bacterial Community Structure along a Small Arctic River and Its Estuary.

Hauptmann AL, Markussen TN, Stibal M, Olsen NS, Elberling B, Bælum J, Sicheritz-Pontén T, Jacobsen CS.

Front Microbiol. 2016 Sep 21;7:1474.


Porphyrobacter mercurialis sp. nov., isolated from a stadium seat and emended description of the genus Porphyrobacter.

Coil DA, Flanagan JC, Stump A, Alexiev A, Lang JM, Eisen JA.

PeerJ. 2015 Nov 12;3:e1400. doi: 10.7717/peerj.1400.


Draft Genome Sequence of Porphyrobacter mercurialis (sp. nov.) Strain Coronado.

Coil DA, Eisen JA.

Genome Announc. 2015 Nov 19;3(6). pii: e00856-15. doi: 10.1128/genomeA.00856-15.


Analysis of a taurine-dependent promoter in Sinorhizobium meliloti that offers tight modulation of gene expression.

Mostafavi M, Lewis JC, Saini T, Bustamante JA, Gao IT, Tran TT, King SN, Huang Z, Chen JC.

BMC Microbiol. 2014 Nov 25;14:295. doi: 10.1186/s12866-014-0295-2.


New rRNA gene-based phylogenies of the Alphaproteobacteria provide perspective on major groups, mitochondrial ancestry and phylogenetic instability.

Ferla MP, Thrash JC, Giovannoni SJ, Patrick WM.

PLoS One. 2013 Dec 11;8(12):e83383. doi: 10.1371/journal.pone.0083383.


Genome of the R-body producing marine alphaproteobacterium Labrenzia alexandrii type strain (DFL-11(T)).

Fiebig A, Pradella S, Petersen J, Päuker O, Michael V, Lünsdorf H, Göker M, Klenk HP, Wagner-Döbler I.

Stand Genomic Sci. 2013 Feb 25;7(3):413-26. doi: 10.4056/sigs.3456959.


Draft Genome Sequence of Euryhalocaulis caribicus Strain JL2009T, a New Member of the Family Hyphomonadaceae Isolated from the Caribbean Sea.

Zhang Y, Zhao Z, Deng W, Xie X, Jiao N.

Genome Announc. 2013 Aug 8;1(4). pii: e00407-13. doi: 10.1128/genomeA.00407-13.


Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)).

Kappler U, Davenport K, Beatson S, Lucas S, Lapidus A, Copeland A, Berry KW, Glavina Del Rio T, Hammon N, Dalin E, Tice H, Pitluck S, Richardson P, Bruce D, Goodwin LA, Han C, Tapia R, Detter JC, Chang YJ, Jeffries CD, Land M, Hauser L, Kyrpides NC, Göker M, Ivanova N, Klenk HP, Woyke T.

Stand Genomic Sci. 2012 Oct 10;7(1):44-58. doi: 10.4056/sigs.3006378.


Streamlining and core genome conservation among highly divergent members of the SAR11 clade.

Grote J, Thrash JC, Huggett MJ, Landry ZC, Carini P, Giovannoni SJ, Rappé MS.

MBio. 2012;3(5). pii: e00252-12. doi: 10.1128/mBio.00252-12.


Interactions between diatoms and bacteria.

Amin SA, Parker MS, Armbrust EV.

Microbiol Mol Biol Rev. 2012 Sep;76(3):667-84. doi: 10.1128/MMBR.00007-12. Review.


Complete genome sequence of Hirschia baltica type strain (IFAM 1418(T)).

Chertkov O, Brown PJ, Kysela DT, de Pedro MA, Lucas S, Copeland A, Lapidus A, Del Rio TG, Tice H, Bruce D, Goodwin L, Pitluck S, Detter JC, Han C, Larimer F, Chang YJ, Jeffries CD, Land M, Hauser L, Kyrpides NC, Ivanova N, Ovchinnikova G, Tindall BJ, Göker M, Klenk HP, Brun YV.

Stand Genomic Sci. 2011 Dec 31;5(3):287-97. doi: 10.4056/sigs.2205004.


Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade.

Thrash JC, Boyd A, Huggett MJ, Grote J, Carini P, Yoder RJ, Robbertse B, Spatafora JW, Rappé MS, Giovannoni SJ.

Sci Rep. 2011;1:13. doi: 10.1038/srep00013.


Genome sequence of Oceanicaulis sp. strain HTCC2633, isolated from the Western Sargasso Sea.

Oh HM, Kang I, Vergin KL, Lee K, Giovannoni SJ, Cho JC.

J Bacteriol. 2011 Jan;193(1):317-8. doi: 10.1128/JB.01267-10.


"Candidatus anadelfobacter veles" and "Candidatus cyrtobacter comes," two new rickettsiales species hosted by the protist ciliate Euplotes harpa (Ciliophora, Spirotrichea).

Vannini C, Ferrantini F, Schleifer KH, Ludwig W, Verni F, Petroni G.

Appl Environ Microbiol. 2010 Jun;76(12):4047-54. doi: 10.1128/AEM.03105-09.


phrR-like gene praR of Azorhizobium caulinodans ORS571 is essential for symbiosis with Sesbania rostrata and is involved in expression of reb genes.

Akiba N, Aono T, Toyazaki H, Sato S, Oyaizu H.

Appl Environ Microbiol. 2010 Jun;76(11):3475-85. doi: 10.1128/AEM.00238-10.


Siderophores from neighboring organisms promote the growth of uncultured bacteria.

D'Onofrio A, Crawford JM, Stewart EJ, Witt K, Gavrish E, Epstein S, Clardy J, Lewis K.

Chem Biol. 2010 Mar 26;17(3):254-64. doi: 10.1016/j.chembiol.2010.02.010.


Comparative genome-wide transcriptional profiling of Azorhizobium caulinodans ORS571 grown under free-living and symbiotic conditions.

Tsukada S, Aono T, Akiba N, Lee KB, Liu CT, Toyazaki H, Oyaizu H.

Appl Environ Microbiol. 2009 Aug;75(15):5037-46. doi: 10.1128/AEM.00398-09.


Complex regulatory pathways coordinate cell-cycle progression and development in Caulobacter crescentus.

Brown PJ, Hardy GG, Trimble MJ, Brun YV.

Adv Microb Physiol. 2009;54:1-101. doi: 10.1016/S0065-2911(08)00001-5. Review.


The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571.

Lee KB, De Backer P, Aono T, Liu CT, Suzuki S, Suzuki T, Kaneko T, Yamada M, Tabata S, Kupfer DM, Najar FZ, Wiley GB, Roe B, Binnewies TT, Ussery DW, D'Haeze W, Herder JD, Gevers D, Vereecke D, Holsters M, Oyaizu H.

BMC Genomics. 2008 Jun 4;9:271. doi: 10.1186/1471-2164-9-271.


A robust species tree for the alphaproteobacteria.

Williams KP, Sobral BW, Dickerman AW.

J Bacteriol. 2007 Jul;189(13):4578-86.

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