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Items: 14

1.

Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.).

Waite DW, Vanwonterghem I, Rinke C, Parks DH, Zhang Y, Takai K, Sievert SM, Simon J, Campbell BJ, Hanson TE, Woyke T, Klotz MG, Hugenholtz P.

Front Microbiol. 2017 Apr 24;8:682. doi: 10.3389/fmicb.2017.00682. eCollection 2017.

2.

Unusual respiratory capacity and nitrogen metabolism in a Parcubacterium (OD1) of the Candidate Phyla Radiation.

Castelle CJ, Brown CT, Thomas BC, Williams KH, Banfield JF.

Sci Rep. 2017 Jan 9;7:40101. doi: 10.1038/srep40101.

3.

Complete nitrification by Nitrospira bacteria.

Daims H, Lebedeva EV, Pjevac P, Han P, Herbold C, Albertsen M, Jehmlich N, Palatinszky M, Vierheilig J, Bulaev A, Kirkegaard RH, von Bergen M, Rattei T, Bendinger B, Nielsen PH, Wagner M.

Nature. 2015 Dec 24;528(7583):504-9. doi: 10.1038/nature16461. Epub 2015 Nov 26.

4.

Metatranscriptomic analysis of diminutive Thiomargarita-like bacteria ("Candidatus Thiopilula" spp.) from abyssal cold seeps of the Barbados Accretionary Prism.

Jones DS, Flood BE, Bailey JV.

Appl Environ Microbiol. 2015 May 1;81(9):3142-56. doi: 10.1128/AEM.00039-15. Epub 2015 Feb 27.

5.

Energy-mediated vs. ammonium-regulated gene expression in the obligate ammonia-oxidizing bacterium, Nitrosococcus oceani.

Stein LY, Campbell MA, Klotz MG.

Front Microbiol. 2013 Sep 13;4:277. doi: 10.3389/fmicb.2013.00277. eCollection 2013.

6.

Nitrate ammonification by Nautilia profundicola AmH: experimental evidence consistent with a free hydroxylamine intermediate.

Hanson TE, Campbell BJ, Kalis KM, Campbell MA, Klotz MG.

Front Microbiol. 2013 Jul 4;4:180. doi: 10.3389/fmicb.2013.00180. eCollection 2013.

7.

Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake.

Yau S, Lauro FM, Williams TJ, Demaere MZ, Brown MV, Rich J, Gibson JA, Cavicchioli R.

ISME J. 2013 Oct;7(10):1944-61. doi: 10.1038/ismej.2013.69. Epub 2013 Apr 25.

8.

Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment.

Junier P, Molina V, Dorador C, Hadas O, Kim OS, Junier T, Witzel JP, Imhoff JF.

Appl Microbiol Biotechnol. 2010 Jan;85(3):425-40. doi: 10.1007/s00253-009-2228-9. Review.

9.

Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola.

Campbell BJ, Smith JL, Hanson TE, Klotz MG, Stein LY, Lee CK, Wu D, Robinson JM, Khouri HM, Eisen JA, Cary SC.

PLoS Genet. 2009 Feb;5(2):e1000362. doi: 10.1371/journal.pgen.1000362. Epub 2009 Feb 6.

10.

Membrane tetraheme cytochrome c(m552) of the ammonia-oxidizing nitrosomonas europaea: a ubiquinone reductase.

Kim HJ, Zatsman A, Upadhyay AK, Whittaker M, Bergmann D, Hendrich MP, Hooper AB.

Biochemistry. 2008 Jun 24;47(25):6539-51. doi: 10.1021/bi8001264.

11.

Characterization of two new genes, amoR and amoD, in the amo operon of the marine ammonia oxidizer Nitrosococcus oceani ATCC 19707.

El Sheikh AF, Poret-Peterson AT, Klotz MG.

Appl Environ Microbiol. 2008 Jan;74(1):312-8. Epub 2007 Nov 9.

12.

Abundance and population structure of ammonia-oxidizing bacteria that inhabit canal sediments receiving effluents from municipal wastewater treatment plants.

Urakawa H, Maki H, Kawabata S, Fujiwara T, Ando H, Kawai T, Hiwatari T, Kohata K, Watanabe M.

Appl Environ Microbiol. 2006 Oct;72(10):6845-50.

13.

Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707.

Klotz MG, Arp DJ, Chain PS, El-Sheikh AF, Hauser LJ, Hommes NG, Larimer FW, Malfatti SA, Norton JM, Poret-Peterson AT, Vergez LM, Ward BB.

Appl Environ Microbiol. 2006 Sep;72(9):6299-315.

14.

NO reductase activity of the tetraheme cytochrome C554 of Nitrosomonas europaea.

Upadhyay AK, Hooper AB, Hendrich MP.

J Am Chem Soc. 2006 Apr 5;128(13):4330-7.

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