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Items: 1 to 20 of 29

1.

Construction and evaluation of yeast expression networks by database-guided predictions.

Papsdorf K, Sima S, Richter G, Richter K.

Microb Cell. 2016 Apr 21;3(6):236-247. doi: 10.15698/mic2016.06.505.

2.

Semantic Signature: Comparative Interpretation of Gene Expression on a Semantic Space.

Kim J, Kim K, Kim JH.

Comput Math Methods Med. 2016;2016:5174503. doi: 10.1155/2016/5174503. Epub 2016 May 3.

3.

Meta-analysis of gene expression signatures reveals hidden links among diverse biological processes in Arabidopsis.

Lai L, Ge SX.

PLoS One. 2014 Nov 14;9(11):e108567. doi: 10.1371/journal.pone.0108567. eCollection 2014.

4.

Cancer-related genes in the transcription signature of facioscapulohumeral dystrophy myoblasts and myotubes.

Dmitriev P, Kairov U, Robert T, Barat A, Lazar V, Carnac G, Laoudj-Chenivesse D, Vassetzky YS.

J Cell Mol Med. 2014 Feb;18(2):208-17. doi: 10.1111/jcmm.12182. Epub 2013 Dec 17.

5.

Aspirin insensitive thrombophilia: transcript profiling of blood identifies platelet abnormalities and HLA restriction.

Fallahi P, Katz R, Toma I, Li R, Reiner J, VanHouten K, Carpio L, Marshall L, Lian Y, Bupp S, Fu SW, Rickles F, Leitenberg D, Lai Y, Weksler BB, Rebling F, Yang Z, McCaffrey TA.

Gene. 2013 May 15;520(2):131-8. doi: 10.1016/j.gene.2013.02.032. Epub 2013 Feb 27.

6.

A novel method for cross-species gene expression analysis.

Kristiansson E, Österlund T, Gunnarsson L, Arne G, Larsson DG, Nerman O.

BMC Bioinformatics. 2013 Feb 27;14:70. doi: 10.1186/1471-2105-14-70.

7.

A data similarity-based strategy for meta-analysis of transcriptional profiles in cancer.

Qiu Q, Lu P, Xiang Y, Shyr Y, Chen X, Lehmann BD, Viox DJ, George AL Jr, Yi Y.

PLoS One. 2013;8(1):e54979. doi: 10.1371/journal.pone.0054979. Epub 2013 Jan 29.

8.

AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities.

Mohammad F, Flight RM, Harrison BJ, Petruska JC, Rouchka EC.

BMC Bioinformatics. 2012 Sep 12;13:229. doi: 10.1186/1471-2105-13-229.

9.

AraPath: a knowledgebase for pathway analysis in Arabidopsis.

Lai L, Liberzon A, Hennessey J, Jiang G, Qi J, Mesirov JP, Ge SX.

Bioinformatics. 2012 Sep 1;28(17):2291-2. doi: 10.1093/bioinformatics/bts421. Epub 2012 Jul 3.

10.

Comprehensive literature review and statistical considerations for microarray meta-analysis.

Tseng GC, Ghosh D, Feingold E.

Nucleic Acids Res. 2012 May;40(9):3785-99. doi: 10.1093/nar/gkr1265. Epub 2012 Jan 19. Review.

11.

Early alterations of the immune transcriptome in cultured progenitor cells from obese African-American women.

Pemu PE, Anderson L, Gee BE, Ofili EO, Ghosh S.

Obesity (Silver Spring). 2012 Jul;20(7):1481-90. doi: 10.1038/oby.2011.370. Epub 2012 Jan 19.

12.

High-throughput processing and normalization of one-color microarrays for transcriptional meta-analyses.

Dozmorov MG, Wren JD.

BMC Bioinformatics. 2011 Oct 18;12 Suppl 10:S2. doi: 10.1186/1471-2105-12-S10-S2.

13.
14.

Meta-analysis of muscle transcriptome data using the MADMuscle database reveals biologically relevant gene patterns.

Baron D, Dubois E, Bihouée A, Teusan R, Steenman M, Jourdon P, Magot A, Péréon Y, Veitia R, Savagner F, Ramstein G, Houlgatte R.

BMC Genomics. 2011 Feb 16;12:113. doi: 10.1186/1471-2164-12-113.

15.

Specific and shared targets of ephrin A signaling in epidermal keratinocytes.

Walsh R, Blumenberg M.

J Biol Chem. 2011 Mar 18;286(11):9419-28. doi: 10.1074/jbc.M110.197087. Epub 2010 Dec 30.

16.

Discovering causal signaling pathways through gene-expression patterns.

Parikh JR, Klinger B, Xia Y, Marto JA, Blüthgen N.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W109-17. doi: 10.1093/nar/gkq424. Epub 2010 May 21.

17.

Integrative meta-analysis of differential gene expression in acute myeloid leukemia.

Miller BG, Stamatoyannopoulos JA.

PLoS One. 2010 Mar 1;5(3):e9466. doi: 10.1371/journal.pone.0009466.

18.

Attenuation of the transforming growth factor beta-signaling pathway in chronic venous ulcers.

Pastar I, Stojadinovic O, Krzyzanowska A, Barrientos S, Stuelten C, Zimmerman K, Blumenberg M, Brem H, Tomic-Canic M.

Mol Med. 2010 Mar;16(3-4):92-101. doi: 10.2119/molmed.2009.00149. Epub 2010 Jan 6.

19.

Quantitative comparison of microarray experiments with published leukemia related gene expression signatures.

Klein HU, Ruckert C, Kohlmann A, Bullinger L, Thiede C, Haferlach T, Dugas M.

BMC Bioinformatics. 2009 Dec 15;10:422. doi: 10.1186/1471-2105-10-422.

20.

GeneSigDB--a curated database of gene expression signatures.

Culhane AC, Schwarzl T, Sultana R, Picard KC, Picard SC, Lu TH, Franklin KR, French SJ, Papenhausen G, Correll M, Quackenbush J.

Nucleic Acids Res. 2010 Jan;38(Database issue):D716-25. doi: 10.1093/nar/gkp1015. Epub 2009 Nov 24.

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