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Items: 15

1.

PALM-IST: Pathway Assembly from Literature Mining--an Information Search Tool.

Mandloi S, Chakrabarti S.

Sci Rep. 2015 May 19;5:10021. doi: 10.1038/srep10021.

2.

A comparison and user-based evaluation of models of textual information structure in the context of cancer risk assessment.

Guo Y, Korhonen A, Liakata M, Silins I, Hogberg J, Stenius U.

BMC Bioinformatics. 2011 Mar 8;12:69. doi: 10.1186/1471-2105-12-69.

3.
4.

Semi-automatic conversion of BioProp semantic annotation to PASBio annotation.

Tsai RT, Dai HJ, Huang CH, Hsu WL.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S18. doi: 10.1186/1471-2105-9-S12-S18.

6.

Nominalization and alternations in biomedical language.

Cohen KB, Palmer M, Hunter L.

PLoS One. 2008 Sep 9;3(9):e3158. doi: 10.1371/journal.pone.0003158.

7.

Anni 2.0: a multipurpose text-mining tool for the life sciences.

Jelier R, Schuemie MJ, Veldhoven A, Dorssers LC, Jenster G, Kors JA.

Genome Biol. 2008;9(6):R96. doi: 10.1186/gb-2008-9-6-r96. Epub 2008 Jun 12.

8.

Semantic role labeling for protein transport predicates.

Bethard S, Lu Z, Martin JH, Hunter L.

BMC Bioinformatics. 2008 Jun 11;9:277. doi: 10.1186/1471-2105-9-277.

9.

OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression.

Hunter L, Lu Z, Firby J, Baumgartner WA Jr, Johnson HL, Ogren PV, Cohen KB.

BMC Bioinformatics. 2008 Jan 31;9:78. doi: 10.1186/1471-2105-9-78.

10.

Strategies for identifying RNA splicing regulatory motifs and predicting alternative splicing events.

Holste D, Ohler U.

PLoS Comput Biol. 2008 Jan;4(1):e21. doi: 10.1371/journal.pcbi.0040021. Review. No abstract available.

11.

Frontiers of biomedical text mining: current progress.

Zweigenbaum P, Demner-Fushman D, Yu H, Cohen KB.

Brief Bioinform. 2007 Sep;8(5):358-75. Epub 2007 Oct 30. Review.

12.

Manual curation is not sufficient for annotation of genomic databases.

Baumgartner WA Jr, Cohen KB, Fox LM, Acquaah-Mensah G, Hunter L.

Bioinformatics. 2007 Jul 1;23(13):i41-8.

13.

A critical review of PASBio's argument structures for biomedical verbs.

Cohen KB, Hunter L.

BMC Bioinformatics. 2006 Nov 24;7 Suppl 3:S5. Review.

14.

Biomedical language processing: what's beyond PubMed?

Hunter L, Cohen KB.

Mol Cell. 2006 Mar 3;21(5):589-94. Review. No abstract available.

15.

HOLLYWOOD: a comparative relational database of alternative splicing.

Holste D, Huo G, Tung V, Burge CB.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D56-62.

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