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Items: 1 to 20 of 144


An integrated bioinformatics platform for investigating the human E3 ubiquitin ligase-substrate interaction network.

Li Y, Xie P, Lu L, Wang J, Diao L, Liu Z, Guo F, He Y, Liu Y, Huang Q, Liang H, Li D, He F.

Nat Commun. 2017 Aug 24;8(1):347. doi: 10.1038/s41467-017-00299-9.


PTEN regulates glioblastoma oncogenesis through chromatin-associated complexes of DAXX and histone H3.3.

Benitez JA, Ma J, D'Antonio M, Boyer A, Camargo MF, Zanca C, Kelly S, Khodadadi-Jamayran A, Jameson NM, Andersen M, Miletic H, Saberi S, Frazer KA, Cavenee WK, Furnari FB.

Nat Commun. 2017 May 12;8:15223. doi: 10.1038/ncomms15223.


Protease-Inhibitor Interaction Predictions: Lessons on the Complexity of Protein-Protein Interactions.

Fortelny N, Butler GS, Overall CM, Pavlidis P.

Mol Cell Proteomics. 2017 Jun;16(6):1038-1051. doi: 10.1074/mcp.M116.065706. Epub 2017 Apr 6.


AtPID: a genome-scale resource for genotype-phenotype associations in Arabidopsis.

Lv Q, Lan Y, Shi Y, Wang H, Pan X, Li P, Shi T.

Nucleic Acids Res. 2017 Jan 4;45(D1):D1060-D1063. doi: 10.1093/nar/gkw1029. Epub 2016 Nov 28.


Protein-protein interaction network of celiac disease.

Zamanian Azodi M, Peyvandi H, Rostami-Nejad M, Safaei A, Rostami K, Vafaee R, Heidari M, Hosseini M, Zali MR.

Gastroenterol Hepatol Bed Bench. 2016 Fall;9(4):268-277.


Prediction of Protein-Protein Interactions by Evidence Combining Methods.

Chang JW, Zhou YQ, Ul Qamar MT, Chen LL, Ding YD.

Int J Mol Sci. 2016 Nov 22;17(11). pii: E1946. Review.


Studying Dynamic Features in Myocardial Infarction Progression by Integrating miRNA-Transcription Factor Co-Regulatory Networks and Time-Series RNA Expression Data from Peripheral Blood Mononuclear Cells.

Shi H, Zhang G, Wang J, Wang Z, Liu X, Cheng L, Li W.

PLoS One. 2016 Jul 1;11(7):e0158638. doi: 10.1371/journal.pone.0158638. eCollection 2016.


Genome-Wide Inference of Protein-Protein Interaction Networks Identifies Crosstalk in Abscisic Acid Signaling.

Zhang F, Liu S, Li L, Zuo K, Zhao L, Zhang L.

Plant Physiol. 2016 Jun;171(2):1511-22. doi: 10.1104/pp.16.00057. Epub 2016 Apr 18.


Mechanisms of fat-induced gastric inhibitory polypeptide/glucose-dependent insulinotropic polypeptide secretion from K cells.

Yamane S, Harada N, Inagaki N.

J Diabetes Investig. 2016 Apr;7 Suppl 1:20-6. doi: 10.1111/jdi.12467. Epub 2016 Mar 14. Review.


Identification of Novel Pathways in Plant Lectin-Induced Cancer Cell Apoptosis.

Shi Z, Sun R, Yu T, Liu R, Cheng LJ, Bao JK, Zou L, Tang Y.

Int J Mol Sci. 2016 Feb 8;17(2):228. doi: 10.3390/ijms17020228.


Predicting physiologically relevant SH3 domain mediated protein-protein interactions in yeast.

Jain S, Bader GD.

Bioinformatics. 2016 Jun 15;32(12):1865-72. doi: 10.1093/bioinformatics/btw045. Epub 2016 Feb 9.


Fundamentals of protein interaction network mapping.

Snider J, Kotlyar M, Saraon P, Yao Z, Jurisica I, Stagljar I.

Mol Syst Biol. 2015 Dec 17;11(12):848. doi: 10.15252/msb.20156351. Review.


Integrated interactions database: tissue-specific view of the human and model organism interactomes.

Kotlyar M, Pastrello C, Sheahan N, Jurisica I.

Nucleic Acids Res. 2016 Jan 4;44(D1):D536-41. doi: 10.1093/nar/gkv1115. Epub 2015 Oct 29.


Genome-wide protein-protein interactions and protein function exploration in cyanobacteria.

Lv Q, Ma W, Liu H, Li J, Wang H, Lu F, Zhao C, Shi T.

Sci Rep. 2015 Oct 22;5:15519. doi: 10.1038/srep15519.


PenPC: A two-step approach to estimate the skeletons of high-dimensional directed acyclic graphs.

Ha MJ, Sun W, Xie J.

Biometrics. 2016 Mar;72(1):146-55. doi: 10.1111/biom.12415. Epub 2015 Sep 25.


Pathway-Dependent Effectiveness of Network Algorithms for Gene Prioritization.

Shim JE, Hwang S, Lee I.

PLoS One. 2015 Jun 19;10(6):e0130589. doi: 10.1371/journal.pone.0130589. eCollection 2015.


Computational prediction of protein-protein interactions.

Ehrenberger T, Cantley LC, Yaffe MB.

Methods Mol Biol. 2015;1278:57-75. doi: 10.1007/978-1-4939-2425-7_4.


Comprehensive data resources and analytical tools for pathological association of aminoacyl tRNA synthetases with cancer.

Lee JH, You S, Hyeon do Y, Kang B, Kim H, Park KM, Han B, Hwang D, Kim S.

Database (Oxford). 2015 Mar 29;2015. pii: bav022. doi: 10.1093/database/bav022. Print 2015.


An overview of the prediction of protein DNA-binding sites.

Si J, Zhao R, Wu R.

Int J Mol Sci. 2015 Mar 6;16(3):5194-215. doi: 10.3390/ijms16035194. Review.


IIIDB: a database for isoform-isoform interactions and isoform network modules.

Tseng YT, Li W, Chen CH, Zhang S, Chen JJ, Zhou X, Liu CC.

BMC Genomics. 2015;16 Suppl 2:S10. doi: 10.1186/1471-2164-16-S2-S10. Epub 2015 Jan 21.

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