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Pathways to Specialized Ribosomes: The Brussels Lecture.

Dinman JD.

J Mol Biol. 2016 May 22;428(10 Pt B):2186-94. doi: 10.1016/j.jmb.2015.12.021. Review.


5SRNAdb: an information resource for 5S ribosomal RNAs.

Szymanski M, Zielezinski A, Barciszewski J, Erdmann VA, Karlowski WM.

Nucleic Acids Res. 2016 Jan 4;44(D1):D180-3. doi: 10.1093/nar/gkv1081.


Eukaryotic rpL10 drives ribosomal rotation.

Sulima SO, Gülay SP, Anjos M, Patchett S, Meskauskas A, Johnson AW, Dinman JD.

Nucleic Acids Res. 2014 Feb;42(3):2049-63. doi: 10.1093/nar/gkt1107.


5S rRNA: Structure and Function from Head to Toe.

Dontsova OA, Dinman JD.

Int J Biomed Sci. 2005 Jun;1(1):1-7.


Eukaryotic 5S rRNA biogenesis.

Ciganda M, Williams N.

Wiley Interdiscip Rev RNA. 2011 Jul-Aug;2(4):523-33. doi: 10.1002/wrna.74. Review.


Biological significance of 5S rRNA import into human mitochondria: role of ribosomal protein MRP-L18.

Smirnov A, Entelis N, Martin RP, Tarassov I.

Genes Dev. 2011 Jun 15;25(12):1289-305. doi: 10.1101/gad.624711.


An extensive network of information flow through the B1b/c intersubunit bridge of the yeast ribosome.

Rhodin MH, Dinman JD.

PLoS One. 2011;6(5):e20048. doi: 10.1371/journal.pone.0020048.


The central core region of yeast ribosomal protein L11 is important for subunit joining and translational fidelity.

Rhodin MH, Rakauskaitė R, Dinman JD.

Mol Genet Genomics. 2011 Jun;285(6):505-16. doi: 10.1007/s00438-011-0623-2.


Overexpression of a natural chloroplast-encoded antisense RNA in tobacco destabilizes 5S rRNA and retards plant growth.

Hotto AM, Huston ZE, Stern DB.

BMC Plant Biol. 2010 Sep 29;10:213. doi: 10.1186/1471-2229-10-213.


A molecular clamp ensures allosteric coordination of peptidyltransfer and ligand binding to the ribosomal A-site.

Meskauskas A, Dinman JD.

Nucleic Acids Res. 2010 Nov;38(21):7800-13. doi: 10.1093/nar/gkq641.


Molecular dynamics simulations suggest that RNA three-way junctions can act as flexible RNA structural elements in the ribosome.

Besseová I, Réblová K, Leontis NB, Sponer J.

Nucleic Acids Res. 2010 Oct;38(18):6247-64. doi: 10.1093/nar/gkq414.


Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and Cryo-EM.

Réblová K, Rázga F, Li W, Gao H, Frank J, Sponer J.

Nucleic Acids Res. 2010 Mar;38(4):1325-40. doi: 10.1093/nar/gkp1057.


Correlation of RNA secondary structure statistics with thermodynamic stability and applications to folding.

Wu JC, Gardner DP, Ozer S, Gutell RR, Ren P.

J Mol Biol. 2009 Aug 28;391(4):769-83. doi: 10.1016/j.jmb.2009.06.036.


Heterochromatic siRNAs and DDM1 independently silence aberrant 5S rDNA transcripts in Arabidopsis.

Blevins T, Pontes O, Pikaard CS, Meins F Jr.

PLoS One. 2009 Jun 16;4(6):e5932. doi: 10.1371/journal.pone.0005932.


The eukaryotic ribosome: current status and challenges.

Dinman JD.

J Biol Chem. 2009 May 1;284(18):11761-5. doi: 10.1074/jbc.R800074200. Review.


Different mechanisms for pseudouridine formation in yeast 5S and 5.8S rRNAs.

Decatur WA, Schnare MN.

Mol Cell Biol. 2008 May;28(10):3089-100. doi: 10.1128/MCB.01574-07.


Two distinct structural elements of 5S rRNA are needed for its import into human mitochondria.

Smirnov A, Tarassov I, Mager-Heckel AM, Letzelter M, Martin RP, Krasheninnikov IA, Entelis N.

RNA. 2008 Apr;14(4):749-59. doi: 10.1261/rna.952208.


5S rRNA: Structure and Function from Head to Toe.

Dinman JD.

Int J Biomed Sci. 2005 Jun;1(1):2-7.


Assembly factors Rpf2 and Rrs1 recruit 5S rRNA and ribosomal proteins rpL5 and rpL11 into nascent ribosomes.

Zhang J, Harnpicharnchai P, Jakovljevic J, Tang L, Guo Y, Oeffinger M, Rout MP, Hiley SL, Hughes T, Woolford JL Jr.

Genes Dev. 2007 Oct 15;21(20):2580-92.


Changes in the conformation of 5S rRNA cause alterations in principal functions of the ribosomal nanomachine.

Kouvela EC, Gerbanas GV, Xaplanteri MA, Petropoulos AD, Dinos GP, Kalpaxis DL.

Nucleic Acids Res. 2007;35(15):5108-19.

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