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Items: 11

1.

Coevolutionary feedback elevates constitutive immune defence: a protein network model.

Kamiya T, Oña L, Wertheim B, van Doorn GS.

BMC Evol Biol. 2016 May 5;16:92. doi: 10.1186/s12862-016-0667-3.

2.

BioJazz: in silico evolution of cellular networks with unbounded complexity using rule-based modeling.

Feng S, Ollivier JF, Swain PS, Soyer OS.

Nucleic Acids Res. 2015 Oct 30;43(19):e123. doi: 10.1093/nar/gkv595. Epub 2015 Jun 22.

3.

Stochastic effects as a force to increase the complexity of signaling networks.

Kuwahara H, Gao X.

Sci Rep. 2013;3:2297. doi: 10.1038/srep02297.

4.

Branched motifs enable long-range interactions in signaling networks through retrograde propagation.

Jesan T, Sarma U, Halder S, Saha B, Sinha S.

PLoS One. 2013 May 31;8(5):e64409. doi: 10.1371/journal.pone.0064409. Print 2013.

5.

Ground state robustness as an evolutionary design principle in signaling networks.

Kartal O, Ebenhöh O.

PLoS One. 2009 Dec 1;4(12):e8001. doi: 10.1371/journal.pone.0008001.

6.

A framework for evolutionary systems biology.

Loewe L.

BMC Syst Biol. 2009 Feb 24;3:27. doi: 10.1186/1752-0509-3-27.

7.

Adaptive dynamics with a single two-state protein.

Csikász-Nagy A, Soyer OS.

J R Soc Interface. 2008 Aug 6;5 Suppl 1:S41-7. doi: 10.1098/rsif.2008.0099.focus.

8.
9.

Global mapping of gene/protein interactions in PubMed abstracts: a framework and an experiment with P53 interactions.

Li X, Chen H, Huang Z, Su H, Martinez JD.

J Biomed Inform. 2007 Oct;40(5):453-64. Epub 2007 Jan 17.

10.

Control of Streptococcus pyogenes virulence: modeling of the CovR/S signal transduction system.

Mitrophanov AY, Churchward G, Borodovsky M.

J Theor Biol. 2007 May 7;246(1):113-28. Epub 2006 Nov 21.

11.

Evolution of complexity in signaling pathways.

Soyer OS, Bonhoeffer S.

Proc Natl Acad Sci U S A. 2006 Oct 31;103(44):16337-42. Epub 2006 Oct 23.

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