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Whole genome microarray analysis of neural progenitor C17.2 cells during differentiation and validation of 30 neural mRNA biomarkers for estimation of developmental neurotoxicity.

Attoff K, Gliga A, Lundqvist J, Norinder U, Forsby A.

PLoS One. 2017 Dec 20;12(12):e0190066. doi: 10.1371/journal.pone.0190066. eCollection 2017.


Identification of consensus biomarkers for predicting non-genotoxic hepatocarcinogens.

Huang SH, Tung CW.

Sci Rep. 2017 Jan 24;7:41176. doi: 10.1038/srep41176.


t-Test at the Probe Level: An Alternative Method to Identify Statistically Significant Genes for Microarray Data.

Boareto M, Caticha N.

Microarrays (Basel). 2014 Dec 16;3(4):340-51. doi: 10.3390/microarrays3040340.


Different Phenotyping Approaches Lead to Dissimilar Biologic Profiles in Men With Chronic Fatigue After Radiation Therapy.

Feng LR, Dickinson K, Kline N, Saligan LN.

J Pain Symptom Manage. 2016 Dec;52(6):832-840. doi: 10.1016/j.jpainsymman.2016.07.007. Epub 2016 Aug 9.


Disruption of STAT5b-Regulated Sexual Dimorphism of the Liver Transcriptome by Diverse Factors Is a Common Event.

Oshida K, Vasani N, Waxman DJ, Corton JC.

PLoS One. 2016 Mar 9;11(3):e0148308. doi: 10.1371/journal.pone.0148308. eCollection 2016.


Evidence for genetic regulation of mRNA expression of the dosage-sensitive gene retinoic acid induced-1 (RAI1) in human brain.

Chen L, Tao Y, Song F, Yuan X, Wang J, Saffen D.

Sci Rep. 2016 Jan 8;6:19010. doi: 10.1038/srep19010.


The path to routine use of genomic biomarkers in the cancer clinic.

Boutros PC.

Genome Res. 2015 Oct;25(10):1508-13. doi: 10.1101/gr.191114.115. Review.


Transcriptomic profiles differentiate normal rectal epithelium and adenocarcinoma.

Hogan J, Dejulius K, Liu X, Coffey JC, Kalady MF.

Int Surg. 2015 May;100(5):818-26. doi: 10.9738/INTSURG-D-14-00272.1.


Method designed to respect molecular heterogeneity can profoundly correct present data interpretations for genome-wide expression analysis.

Chen CH, Hsu CL, Huang SH, Chen SY, Hung YL, Chen HR, Wu YC, Su LJ, Lee HC.

PLoS One. 2015 Mar 20;10(3):e0121154. doi: 10.1371/journal.pone.0121154. eCollection 2015.


Identification of modulators of the nuclear receptor peroxisome proliferator-activated receptor α (PPARα) in a mouse liver gene expression compendium.

Oshida K, Vasani N, Thomas RS, Applegate D, Rosen M, Abbott B, Lau C, Guo G, Aleksunes LM, Klaassen C, Corton JC.

PLoS One. 2015 Feb 17;10(2):e0112655. doi: 10.1371/journal.pone.0112655. eCollection 2015. Erratum in: PLoS One. 2015;10(4):e0124224.


Microarray-based RNA profiling of breast cancer: batch effect removal improves cross-platform consistency.

Larsen MJ, Thomassen M, Tan Q, Sørensen KP, Kruse TA.

Biomed Res Int. 2014;2014:651751. doi: 10.1155/2014/651751. Epub 2014 Jul 3.


Evaluation of high throughput gene expression platforms using a genomic biomarker signature for prediction of skin sensitization.

Forreryd A, Johansson H, Albrekt AS, Lindstedt M.

BMC Genomics. 2014 May 16;15:379. doi: 10.1186/1471-2164-15-379.


Fold change rank ordering statistics: a new method for detecting differentially expressed genes.

Dembélé D, Kastner P.

BMC Bioinformatics. 2014 Jan 15;15:14. doi: 10.1186/1471-2105-15-14.


Prediction of drug-target interactions for drug repositioning only based on genomic expression similarity.

Wang K, Sun J, Zhou S, Wan C, Qin S, Li C, He L, Yang L.

PLoS Comput Biol. 2013;9(11):e1003315. doi: 10.1371/journal.pcbi.1003315. Epub 2013 Nov 7. Erratum in: PLoS Comput Biol. 2013 Nov;9(11). doi:10.1371/annotation/958d4c23-4f1e-4579-b6ef-8ae1f828b1dd.


Robust microarray meta-analysis identifies differentially expressed genes for clinical prediction.

Phan JH, Young AN, Wang MD.

ScientificWorldJournal. 2012;2012:989637. doi: 10.1100/2012/989637. Epub 2012 Dec 18.


Impact of ischemia and procurement conditions on gene expression in renal cell carcinoma.

Liu NW, Sanford T, Srinivasan R, Liu JL, Khurana K, Aprelikova O, Valero V, Bechert C, Worrell R, Pinto PA, Yang Y, Merino M, Linehan WM, Bratslavsky G.

Clin Cancer Res. 2013 Jan 1;19(1):42-9. doi: 10.1158/1078-0432.CCR-12-2606. Epub 2012 Nov 7.


Classification of unknown primary tumors with a data-driven method based on a large microarray reference database.

Ojala KA, Kilpinen SK, Kallioniemi OP.

Genome Med. 2011 Oct 17;3(9):63. doi: 10.1186/gm279.


COLOMBOS: access port for cross-platform bacterial expression compendia.

Engelen K, Fu Q, Meysman P, Sánchez-Rodríguez A, De Smet R, Lemmens K, Fierro AC, Marchal K.

PLoS One. 2011;6(7):e20938. doi: 10.1371/journal.pone.0020938. Epub 2011 Jul 14.


Combining DNA-microarray data in systemic lupus erythematosus.

Verweij CL, Vosslamber S.

Genome Med. 2011 May 31;3(5):30. doi: 10.1186/gm246.


Evaluating methods for ranking differentially expressed genes applied to microArray quality control data.

Kadota K, Shimizu K.

BMC Bioinformatics. 2011 Jun 6;12:227. doi: 10.1186/1471-2105-12-227.

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