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Recognizing the SINEs of Infection: Regulation of Retrotransposon Expression and Modulation of Host Cell Processes.

Dunker W, Zhao Y, Song Y, Karijolich J.

Viruses. 2017 Dec 18;9(12). pii: E386. doi: 10.3390/v9120386. Review.


Stimulation of RNA Polymerase II ubiquitination and degradation by yeast mRNA 3'-end processing factors is a conserved DNA damage response in eukaryotes.

Kuehner JN, Kaufman JW, Moore C.

DNA Repair (Amst). 2017 Sep;57:151-160. doi: 10.1016/j.dnarep.2017.07.006. Epub 2017 Jul 23.


Transcriptional Activation of Pericentromeric Satellite Repeats and Disruption of Centromeric Clustering upon Proteasome Inhibition.

Natisvili T, Yandim C, Silva R, Emanuelli G, Krueger F, Nageshwaran S, Festenstein R.

PLoS One. 2016 Nov 2;11(11):e0165873. doi: 10.1371/journal.pone.0165873. eCollection 2016.


RNA polymerase II senses obstruction in the DNA minor groove via a conserved sensor motif.

Xu L, Wang W, Gotte D, Yang F, Hare AA, Welch TR, Li BC, Shin JH, Chong J, Strathern JN, Dervan PB, Wang D.

Proc Natl Acad Sci U S A. 2016 Nov 1;113(44):12426-12431. Epub 2016 Oct 17.


RNA polymerase II depletion promotes transcription of alternative mRNA species.

Yu L, Rege M, Peterson CL, Volkert MR.

BMC Mol Biol. 2016 Aug 30;17(1):20. doi: 10.1186/s12867-016-0074-8.


Rift Valley fever virus NSs protein functions and the similarity to other bunyavirus NSs proteins.

Ly HJ, Ikegami T.

Virol J. 2016 Jul 2;13:118. doi: 10.1186/s12985-016-0573-8. Review.


Mec1, INO80, and the PAF1 complex cooperate to limit transcription replication conflicts through RNAPII removal during replication stress.

Poli J, Gerhold CB, Tosi A, Hustedt N, Seeber A, Sack R, Herzog F, Pasero P, Shimada K, Hopfner KP, Gasser SM.

Genes Dev. 2016 Feb 1;30(3):337-54. doi: 10.1101/gad.273813.115. Epub 2016 Jan 21.


INO80 Chromatin Remodeler Facilitates Release of RNA Polymerase II from Chromatin for Ubiquitin-Mediated Proteasomal Degradation.

Lafon A, Taranum S, Pietrocola F, Dingli F, Loew D, Brahma S, Bartholomew B, Papamichos-Chronakis M.

Mol Cell. 2015 Dec 3;60(5):784-796. doi: 10.1016/j.molcel.2015.10.028. Epub 2015 Nov 19.


Genotoxic stress inhibits Ewing sarcoma cell growth by modulating alternative pre-mRNA processing of the RNA helicase DHX9.

Fidaleo M, Svetoni F, Volpe E, Miñana B, Caporossi D, Paronetto MP.

Oncotarget. 2015 Oct 13;6(31):31740-57. doi: 10.18632/oncotarget.5033.


Role of Rsp5 ubiquitin ligase in biogenesis of rRNA, mRNA and tRNA in yeast.

Domanska A, Kaminska J.

RNA Biol. 2015;12(12):1265-74. doi: 10.1080/15476286.2015.1094604. Review.


Assembly of the Elongin A Ubiquitin Ligase Is Regulated by Genotoxic and Other Stresses.

Weems JC, Slaughter BD, Unruh JR, Hall SM, McLaird MB, Gilmore JM, Washburn MP, Florens L, Yasukawa T, Aso T, Conaway JW, Conaway RC.

J Biol Chem. 2015 Jun 12;290(24):15030-41. doi: 10.1074/jbc.M114.632794. Epub 2015 Apr 15.


Coordinated gene regulation in the initial phase of salt stress adaptation.

Vanacloig-Pedros E, Bets-Plasencia C, Pascual-Ahuir A, Proft M.

J Biol Chem. 2015 Apr 17;290(16):10163-75. doi: 10.1074/jbc.M115.637264. Epub 2015 Mar 5.


Sequence features and transcriptional stalling within centromere DNA promote establishment of CENP-A chromatin.

Catania S, Pidoux AL, Allshire RC.

PLoS Genet. 2015 Mar 4;11(3):e1004986. doi: 10.1371/journal.pgen.1004986. eCollection 2015 Mar.


Regulation of active genome integrity and expression by Rad26p.

Malik S, Bhaumik SR.

Nucleus. 2014;5(6):520-6. doi: 10.4161/nucl.36230. Epub 2014 Oct 31. Review.


A genetic assay for transcription errors reveals multilayer control of RNA polymerase II fidelity.

Irvin JD, Kireeva ML, Gotte DR, Shafer BK, Huang I, Kashlev M, Strathern JN.

PLoS Genet. 2014 Sep 18;10(9):e1004532. doi: 10.1371/journal.pgen.1004532. eCollection 2014 Sep.


UV damage-induced RNA polymerase II stalling stimulates H2B deubiquitylation.

Mao P, Meas R, Dorgan KM, Smerdon MJ.

Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):12811-6. doi: 10.1073/pnas.1403901111. Epub 2014 Aug 18.


Degradation of DNA damage-independently stalled RNA polymerase II is independent of the E3 ligase Elc1.

Karakasili E, Burkert-Kautzsch C, Kieser A, Sträßer K.

Nucleic Acids Res. 2014;42(16):10503-15. doi: 10.1093/nar/gku731. Epub 2014 Aug 12. Erratum in: Nucleic Acids Res. 2015 Feb 27;43(4):2486.


Stress induces changes in the phosphorylation of Trypanosoma cruzi RNA polymerase II, affecting its association with chromatin and RNA processing.

Rocha AA, Moretti NS, Schenkman S.

Eukaryot Cell. 2014 Jul;13(7):855-65. doi: 10.1128/EC.00066-14. Epub 2014 May 9.


Kinetics of promoter Pol II on Hsp70 reveal stable pausing and key insights into its regulation.

Buckley MS, Kwak H, Zipfel WR, Lis JT.

Genes Dev. 2014 Jan 1;28(1):14-9. doi: 10.1101/gad.231886.113.

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