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Items: 1 to 20 of 29


Evolutionary Engineering in Chemostat Cultures for Improved Maltotriose Fermentation Kinetics in Saccharomyces pastorianus Lager Brewing Yeast.

Brickwedde A, van den Broek M, Geertman JA, Magalhães F, Kuijpers NGA, Gibson B, Pronk JT, Daran JG.

Front Microbiol. 2017 Sep 8;8:1690. doi: 10.3389/fmicb.2017.01690. eCollection 2017.


Transient MutS-Based Hypermutation System for Adaptive Evolution of Lactobacillus casei to Low pH.

Overbeck TJ, Welker DL, Hughes JE, Steele JL, Broadbent JR.

Appl Environ Microbiol. 2017 Sep 29;83(20). pii: e01120-17. doi: 10.1128/AEM.01120-17. Print 2017 Oct 15.


Genome Mutational and Transcriptional Hotspots Are Traps for Duplicated Genes and Sources of Adaptations.

Fares MA, Sabater-Muñoz B, Toft C.

Genome Biol Evol. 2017 May 1;9(5):1229-1240. doi: 10.1093/gbe/evx085.


Evolutionary pressures on microbial metabolic strategies in the chemostat.

Wortel MT, Bosdriesz E, Teusink B, Bruggeman FJ.

Sci Rep. 2016 Jul 6;6:29503. doi: 10.1038/srep29503.


Maintenance-energy requirements and robustness of Saccharomyces cerevisiae at aerobic near-zero specific growth rates.

Vos T, Hakkaart XD, de Hulster EA, van Maris AJ, Pronk JT, Daran-Lapujade P.

Microb Cell Fact. 2016 Jun 17;15(1):111. doi: 10.1186/s12934-016-0501-z.


Non-conventional Yeast Species for Lowering Ethanol Content of Wines.

Ciani M, Morales P, Comitini F, Tronchoni J, Canonico L, Curiel JA, Oro L, Rodrigues AJ, Gonzalez R.

Front Microbiol. 2016 May 4;7:642. doi: 10.3389/fmicb.2016.00642. eCollection 2016. Review.


Metabolic Trade-offs in Yeast are Caused by F1F0-ATP synthase.

Nilsson A, Nielsen J.

Sci Rep. 2016 Mar 1;6:22264. doi: 10.1038/srep22264.


A Minimal Set of Glycolytic Genes Reveals Strong Redundancies in Saccharomyces cerevisiae Central Metabolism.

Solis-Escalante D, Kuijpers NG, Barrajon-Simancas N, van den Broek M, Pronk JT, Daran JM, Daran-Lapujade P.

Eukaryot Cell. 2015 Aug;14(8):804-16. doi: 10.1128/EC.00064-15. Epub 2015 Jun 12.


Metabolism at evolutionary optimal States.

Rabbers I, van Heerden JH, Nordholt N, Bachmann H, Teusink B, Bruggeman FJ.

Metabolites. 2015 Jun 2;5(2):311-43. doi: 10.3390/metabo5020311. Review.


How fast-growing bacteria robustly tune their ribosome concentration to approximate growth-rate maximization.

Bosdriesz E, Molenaar D, Teusink B, Bruggeman FJ.

FEBS J. 2015 May;282(10):2029-44. doi: 10.1111/febs.13258. Epub 2015 Mar 26.


The fates of mutant lineages and the distribution of fitness effects of beneficial mutations in laboratory budding yeast populations.

Frenkel EM, Good BH, Desai MM.

Genetics. 2014 Apr;196(4):1217-26. doi: 10.1534/genetics.113.160069. Epub 2014 Feb 10.


Adaptive laboratory evolution -- principles and applications for biotechnology.

Dragosits M, Mattanovich D.

Microb Cell Fact. 2013 Jul 1;12:64. doi: 10.1186/1475-2859-12-64. Review.


Similar temperature dependencies of glycolytic enzymes: an evolutionary adaptation to temperature dynamics?

Cruz LA, Hebly M, Duong GH, Wahl SA, Pronk JT, Heijnen JJ, Daran-Lapujade P, van Gulik WM.

BMC Syst Biol. 2012 Dec 7;6:151. doi: 10.1186/1752-0509-6-151.


Understanding regulation of metabolism through feasibility analysis.

Nikerel E, Berkhout J, Hu F, Teusink B, Reinders MJ, de Ridder D.

PLoS One. 2012;7(7):e39396. doi: 10.1371/journal.pone.0039396. Epub 2012 Jul 9.


Engineered Trx2p industrial yeast strain protects glycolysis and fermentation proteins from oxidative carbonylation during biomass propagation.

Gómez-Pastor R, Pérez-Torrado R, Cabiscol E, Ros J, Matallana E.

Microb Cell Fact. 2012 Jan 9;11:4. doi: 10.1186/1475-2859-11-4.


Genome-wide analytical approaches for reverse metabolic engineering of industrially relevant phenotypes in yeast.

Oud B, van Maris AJ, Daran JM, Pronk JT.

FEMS Yeast Res. 2012 Mar;12(2):183-96. doi: 10.1111/j.1567-1364.2011.00776.x. Epub 2012 Jan 10. Review.


pH-dependent uptake of fumaric acid in Saccharomyces cerevisiae under anaerobic conditions.

Jamalzadeh E, Verheijen PJ, Heijnen JJ, van Gulik WM.

Appl Environ Microbiol. 2012 Feb;78(3):705-16. doi: 10.1128/AEM.05591-11. Epub 2011 Nov 23.


Hunger artists: yeast adapted to carbon limitation show trade-offs under carbon sufficiency.

Wenger JW, Piotrowski J, Nagarajan S, Chiotti K, Sherlock G, Rosenzweig F.

PLoS Genet. 2011 Aug;7(8):e1002202. doi: 10.1371/journal.pgen.1002202. Epub 2011 Aug 4.


E Unibus Plurum: genomic analysis of an experimentally evolved polymorphism in Escherichia coli.

Kinnersley MA, Holben WE, Rosenzweig F.

PLoS Genet. 2009 Nov;5(11):e1000713. doi: 10.1371/journal.pgen.1000713. Epub 2009 Nov 6.


Dynamics of glycolytic regulation during adaptation of Saccharomyces cerevisiae to fermentative metabolism.

van den Brink J, Canelas AB, van Gulik WM, Pronk JT, Heijnen JJ, de Winde JH, Daran-Lapujade P.

Appl Environ Microbiol. 2008 Sep;74(18):5710-23. doi: 10.1128/AEM.01121-08. Epub 2008 Jul 18.

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