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PTBP1 and PTBP2 Serve Both Specific and Redundant Functions in Neuronal Pre-mRNA Splicing.

Vuong JK, Lin CH, Zhang M, Chen L, Black DL, Zheng S.

Cell Rep. 2016 Dec 6;17(10):2766-2775. doi: 10.1016/j.celrep.2016.11.034.


Large-scale remodeling of a repressed exon ribonucleoprotein to an exon definition complex active for splicing.

Wongpalee SP, Vashisht A, Sharma S, Chui D, Wohlschlegel JA, Black DL.

Elife. 2016 Nov 24;5. pii: e19743. doi: 10.7554/eLife.19743.


Multiple determinants of splicing repression activity in the polypyrimidine tract binding proteins, PTBP1 and PTBP2.

Keppetipola NM, Yeom KH, Hernandez AL, Bui T, Sharma S, Black DL.

RNA. 2016 Aug;22(8):1172-80. doi: 10.1261/rna.057505.116. Epub 2016 Jun 10.


Rbfox Proteins Regulate Splicing as Part of a Large Multiprotein Complex LASR.

Damianov A, Ying Y, Lin CH, Lee JA, Tran D, Vashisht AA, Bahrami-Samani E, Xing Y, Martin KC, Wohlschlegel JA, Black DL.

Cell. 2016 Apr 21;165(3):606-19. doi: 10.1016/j.cell.2016.03.040.


Polypyrimidine tract binding protein 1 protects mRNAs from recognition by the nonsense-mediated mRNA decay pathway.

Ge Z, Quek BL, Beemon KL, Hogg JR.

Elife. 2016 Jan 8;5. pii: e11155. doi: 10.7554/eLife.11155.


The splicing regulator PTBP1 controls the activity of the transcription factor Pbx1 during neuronal differentiation.

Linares AJ, Lin CH, Damianov A, Adams KL, Novitch BG, Black DL.

Elife. 2015 Dec 24;4:e09268. doi: 10.7554/eLife.09268.


HNRNP G and HTRA2-BETA1 regulate estrogen receptor alpha expression with potential impact on endometrial cancer.

Hirschfeld M, Ouyang YQ, Jaeger M, Erbes T, Orlowska-Volk M, Zur Hausen A, Stickeler E.

BMC Cancer. 2015 Feb 27;15:86. doi: 10.1186/s12885-015-1088-1.


Nuclear matrix protein Matrin3 regulates alternative splicing and forms overlapping regulatory networks with PTB.

Coelho MB, Attig J, Bellora N, König J, Hallegger M, Kayikci M, Eyras E, Ule J, Smith CW.

EMBO J. 2015 Mar 4;34(5):653-68. doi: 10.15252/embj.201489852. Epub 2015 Jan 19.


The organization of RNA contacts by PTB for regulation of FAS splicing.

Mickleburgh I, Kafasla P, Cherny D, Llorian M, Curry S, Jackson RJ, Smith CW.

Nucleic Acids Res. 2014 Jul;42(13):8605-20. doi: 10.1093/nar/gku519. Epub 2014 Jun 23.


De novo prediction of PTBP1 binding and splicing targets reveals unexpected features of its RNA recognition and function.

Han A, Stoilov P, Linares AJ, Zhou Y, Fu XD, Black DL.

PLoS Comput Biol. 2014 Jan 30;10(1):e1003442. doi: 10.1371/journal.pcbi.1003442. eCollection 2014 Jan.


Arginine-rich motifs are not required for hepatitis delta virus RNA binding activity of the hepatitis delta antigen.

Daigh LH, Griffin BL, Soroush A, Mamedov MR, Casey JL.

J Virol. 2013 Aug;87(15):8665-74. doi: 10.1128/JVI.00929-13. Epub 2013 Jun 5.


A biophysical model for identifying splicing regulatory elements and their interactions.

Wen J, Chen Z, Cai X.

PLoS One. 2013;8(1):e54885. doi: 10.1371/journal.pone.0054885. Epub 2013 Jan 30.


YB-1 binds to CAUC motifs and stimulates exon inclusion by enhancing the recruitment of U2AF to weak polypyrimidine tracts.

Wei WJ, Mu SR, Heiner M, Fu X, Cao LJ, Gong XF, Bindereif A, Hui J.

Nucleic Acids Res. 2012 Sep 1;40(17):8622-36. Epub 2012 Jun 22.


Neuronal regulation of pre-mRNA splicing by polypyrimidine tract binding proteins, PTBP1 and PTBP2.

Keppetipola N, Sharma S, Li Q, Black DL.

Crit Rev Biochem Mol Biol. 2012 Jul-Aug;47(4):360-78. doi: 10.3109/10409238.2012.691456. Epub 2012 Jun 2.


The Role of Polypyrimidine Tract-Binding Proteins and Other hnRNP Proteins in Plant Splicing Regulation.

Wachter A, Rühl C, Stauffer E.

Front Plant Sci. 2012 May 1;3:81. doi: 10.3389/fpls.2012.00081. eCollection 2012.


PSD-95 is post-transcriptionally repressed during early neural development by PTBP1 and PTBP2.

Zheng S, Gray EE, Chawla G, Porse BT, O'Dell TJ, Black DL.

Nat Neurosci. 2012 Jan 15;15(3):381-8, S1. doi: 10.1038/nn.3026.


Activation and repression functions of an SR splicing regulator depend on exonic versus intronic-binding position.

Shen M, Mattox W.

Nucleic Acids Res. 2012 Jan;40(1):428-37. doi: 10.1093/nar/gkr713. Epub 2011 Sep 13.


RBM4 down-regulates PTB and antagonizes its activity in muscle cell-specific alternative splicing.

Lin JC, Tarn WY.

J Cell Biol. 2011 May 2;193(3):509-20. doi: 10.1083/jcb.201007131. Epub 2011 Apr 25.


U1 snRNA directly interacts with polypyrimidine tract-binding protein during splicing repression.

Sharma S, Maris C, Allain FH, Black DL.

Mol Cell. 2011 Mar 4;41(5):579-88. doi: 10.1016/j.molcel.2011.02.012.

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