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Comparative Proteomics of Mouse Tears and Saliva: Evidence from Large Protein Families for Functional Adaptation.

Karn RC, Laukaitis CM.

Proteomes. 2015 Sep 7;3(3):283-297. doi: 10.3390/proteomes3030283.


Mass spectrometry for the discovery of biomarkers of sepsis.

Ludwig KR, Hummon AB.

Mol Biosyst. 2017 Mar 28;13(4):648-664. doi: 10.1039/c6mb00656f. Review.


Rationalising the role of Keratin 9 as a biomarker for Alzheimer's disease.

Richens JL, Spencer HL, Butler M, Cantlay F, Vere KA, Bajaj N, Morgan K, O'Shea P.

Sci Rep. 2016 Mar 14;6:22962. doi: 10.1038/srep22962.


The clinical impact of recent advances in LC-MS for cancer biomarker discovery and verification.

Wang H, Shi T, Qian WJ, Liu T, Kagan J, Srivastava S, Smith RD, Rodland KD, Camp DG 2nd.

Expert Rev Proteomics. 2016;13(1):99-114. doi: 10.1586/14789450.2016.1122529. Epub 2015 Dec 19. Review.


Genomics of injury: The Glue Grant experience.

Tompkins RG.

J Trauma Acute Care Surg. 2015 Apr;78(4):671-86. doi: 10.1097/TA.0000000000000568. No abstract available.


Did androgen-binding protein paralogs undergo neo- and/or Subfunctionalization as the Abp gene region expanded in the mouse genome?

Karn RC, Chung AG, Laukaitis CM.

PLoS One. 2014 Dec 22;9(12):e115454. doi: 10.1371/journal.pone.0115454. eCollection 2014.


Systematic assessment of survey scan and MS2-based abundance strategies for label-free quantitative proteomics using high-resolution MS data.

Tu C, Li J, Sheng Q, Zhang M, Qu J.

J Proteome Res. 2014 Apr 4;13(4):2069-79. doi: 10.1021/pr401206m. Epub 2014 Mar 24.


Identification of Annexin A1 protein expression in human gastric adenocarcinoma using proteomics and tissue microarray.

Zhang ZQ, Li XJ, Liu GT, Xia Y, Zhang XY, Wen H.

World J Gastroenterol. 2013 Nov 21;19(43):7795-803. doi: 10.3748/wjg.v19.i43.7795.


Determination of burn patient outcome by large-scale quantitative discovery proteomics.

Finnerty CC, Jeschke MG, Qian WJ, Kaushal A, Xiao W, Liu T, Gritsenko MA, Moore RJ, Camp DG 2nd, Moldawer LL, Elson C, Schoenfeld D, Gamelli R, Gibran N, Klein M, Arnoldo B, Remick D, Smith RD, Davis R, Tompkins RG, Herndon DN; Investigators of the Inflammation and the Host Response Glue Grant.

Crit Care Med. 2013 Jun;41(6):1421-34. doi: 10.1097/CCM.0b013e31827c072e.


Photofrin binds to procaspase-3 and mediates photodynamic treatment-triggered methionine oxidation and inactivation of procaspase-3.

Hsieh YJ, Chien KY, Lin SY, Sabu S, Hsu RM, Chi LM, Lyu PC, Yu JS.

Cell Death Dis. 2012 Jul 12;3:e347. doi: 10.1038/cddis.2012.85.


Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis.

McDermott JE, Diamond DL, Corley C, Rasmussen AL, Katze MG, Waters KM.

BMC Syst Biol. 2012 Apr 30;6:28. doi: 10.1186/1752-0509-6-28.


Network analysis of epidermal growth factor signaling using integrated genomic, proteomic and phosphorylation data.

Waters KM, Liu T, Quesenberry RD, Willse AR, Bandyopadhyay S, Kathmann LE, Weber TJ, Smith RD, Wiley HS, Thrall BD.

PLoS One. 2012;7(3):e34515. doi: 10.1371/journal.pone.0034515. Epub 2012 Mar 29.


18O-labeled proteome reference as global internal standards for targeted quantification by selected reaction monitoring-mass spectrometry.

Kim JS, Fillmore TL, Liu T, Robinson E, Hossain M, Champion BL, Moore RJ, Camp DG 2nd, Smith RD, Qian WJ.

Mol Cell Proteomics. 2011 Dec;10(12):M110.007302. doi: 10.1074/mcp.M110.007302. Epub 2011 Oct 11.


Quantitative proteomics analysis of adsorbed plasma proteins classifies nanoparticles with different surface properties and size.

Zhang H, Burnum KE, Luna ML, Petritis BO, Kim JS, Qian WJ, Moore RJ, Heredia-Langner A, Webb-Robertson BJ, Thrall BD, Camp DG 2nd, Smith RD, Pounds JG, Liu T.

Proteomics. 2011 Dec;11(23):4569-77. doi: 10.1002/pmic.201100037. Epub 2011 Nov 4.


IgY14 and SuperMix immunoaffinity separations coupled with liquid chromatography-mass spectrometry for human plasma proteomics biomarker discovery.

Shi T, Zhou JY, Gritsenko MA, Hossain M, Camp DG 2nd, Smith RD, Qian WJ.

Methods. 2012 Feb;56(2):246-53. doi: 10.1016/j.ymeth.2011.09.001. Epub 2011 Sep 10. Review.


Unraveling pancreatic islet biology by quantitative proteomics.

Zhou JY, Dann GP, Liew CW, Smith RD, Kulkarni RN, Qian WJ.

Expert Rev Proteomics. 2011 Aug;8(4):495-504. doi: 10.1586/EPR.11.39. Review.


A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas.

Farrah T, Deutsch EW, Omenn GS, Campbell DS, Sun Z, Bletz JA, Mallick P, Katz JE, Malmström J, Ossola R, Watts JD, Lin B, Zhang H, Moritz RL, Aebersold R.

Mol Cell Proteomics. 2011 Sep;10(9):M110.006353. doi: 10.1074/mcp.M110.006353. Epub 2011 Jun 1.


Liquid chromatography-mass spectrometry-based quantitative proteomics.

Xie F, Liu T, Qian WJ, Petyuk VA, Smith RD.

J Biol Chem. 2011 Jul 22;286(29):25443-9. doi: 10.1074/jbc.R110.199703. Epub 2011 Jun 1. Review.


Diurnal rhythms result in significant changes in the cellular protein complement in the cyanobacterium Cyanothece 51142.

Stöckel J, Jacobs JM, Elvitigala TR, Liberton M, Welsh EA, Polpitiya AD, Gritsenko MA, Nicora CD, Koppenaal DW, Smith RD, Pakrasi HB.

PLoS One. 2011 Feb 22;6(2):e16680. doi: 10.1371/journal.pone.0016680.

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