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Items: 1 to 20 of 39


A Comparison of Rosetta Stones in Adapter Protein Families.

Kumar HS, Kumar V.

Bioinformation. 2016 Aug 15;12(5):285-292. doi: 10.6026/97320630012285. eCollection 2016 Aug 15.


PTIR: Predicted Tomato Interactome Resource.

Yue J, Xu W, Ban R, Huang S, Miao M, Tang X, Liu G, Liu Y.

Sci Rep. 2016 Apr 28;6:25047. doi: 10.1038/srep25047.


Functional Diversification after Gene Duplication: Paralog Specific Regions of Structural Disorder and Phosphorylation in p53, p63, and p73.

Dos Santos HG, Nunez-Castilla J, Siltberg-Liberles J.

PLoS One. 2016 Mar 22;11(3):e0151961. doi: 10.1371/journal.pone.0151961. eCollection 2016 Mar 22.


Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View.

Saccenti E, Nieuwenhuijse D, Koehorst JJ, Martins dos Santos VA, Schaap PJ.

PLoS One. 2015 Sep 14;10(9):e0137908. doi: 10.1371/journal.pone.0137908. eCollection 2015 Sep 14.


Insights into domain-domain motions in proteins and RNA from solution NMR.

Ravera E, Salmon L, Fragai M, Parigi G, Al-Hashimi H, Luchinat C.

Acc Chem Res. 2014 Oct 21;47(10):3118-26. doi: 10.1021/ar5002318. Epub 2014 Aug 22. Review.


Modulation of a protein free-energy landscape by circular permutation.

Radou G, Enciso M, Krivov S, Paci E.

J Phys Chem B. 2013 Nov 7;117(44):13743-7. doi: 10.1021/jp406818t. Epub 2013 Oct 23.


Microsatellite-encoded domain in rodent Sry functions as a genetic capacitor to enable the rapid evolution of biological novelty.

Chen YS, Racca JD, Sequeira PW, Phillips NB, Weiss MA.

Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):E3061-70. doi: 10.1073/pnas.1300860110. Epub 2013 Jul 30.


A protein domain-centric approach for the comparative analysis of human and yeast phenotypically relevant mutations.

Peterson TA, Park D, Kann MG.

BMC Genomics. 2013;14 Suppl 3:S5. doi: 10.1186/1471-2164-14-S3-S5. Epub 2013 May 28.


New types of metacaspases in phytoplankton reveal diverse origins of cell death proteases.

Choi CJ, Berges JA.

Cell Death Dis. 2013 Feb 14;4:e490. doi: 10.1038/cddis.2013.21.


Evolution of domain architectures and catalytic functions of enzymes in metabolic systems.

Suen S, Lu HH, Yeang CH.

Genome Biol Evol. 2012;4(9):976-93. doi: 10.1093/gbe/evs072. Epub 2012 Aug 30.


Evolution of the PWWP-domain encoding genes in the plant and animal lineages.

Alvarez-Venegas R, Avramova Z.

BMC Evol Biol. 2012 Jun 26;12:101.


Joint scaling laws in functional and evolutionary categories in prokaryotic genomes.

Grilli J, Bassetti B, Maslov S, Cosentino Lagomarsino M.

Nucleic Acids Res. 2012 Jan;40(2):530-40. doi: 10.1093/nar/gkr711. Epub 2011 Sep 21.


Evolution at the subgene level: domain rearrangements in the Drosophila phylogeny.

Wu YC, Rasmussen MD, Kellis M.

Mol Biol Evol. 2012 Feb;29(2):689-705. doi: 10.1093/molbev/msr222. Epub 2011 Sep 7.


Unexpected complexity of the reef-building coral Acropora millepora transcription factor network.

Ryu T, Mavromatis CH, Bayer T, Voolstra CR, Ravasi T.

BMC Syst Biol. 2011 Apr 28;5:58. doi: 10.1186/1752-0509-5-58.


BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation.

Bannert C, Welfle A, Aus dem Spring C, Schomburg D.

BMC Bioinformatics. 2010 Dec 1;11:589. doi: 10.1186/1471-2105-11-589.


DMDM: domain mapping of disease mutations.

Peterson TA, Adadey A, Santana-Cruz I, Sun Y, Winder A, Kann MG.

Bioinformatics. 2010 Oct 1;26(19):2458-9. doi: 10.1093/bioinformatics/btq447. Epub 2010 Aug 4.


Modeling-dependent protein characterization of the rice aldehyde dehydrogenase (ALDH) superfamily reveals distinct functional and structural features.

Kotchoni SO, Jimenez-Lopez JC, Gao D, Edwards V, Gachomo EW, Margam VM, Seufferheld MJ.

PLoS One. 2010 Jul 12;5(7):e11516. doi: 10.1371/journal.pone.0011516.


Multiple horizontal gene transfer events and domain fusions have created novel regulatory and metabolic networks in the oomycete genome.

Morris PF, Schlosser LR, Onasch KD, Wittenschlaeger T, Austin R, Provart N.

PLoS One. 2009 Jul 2;4(7):e6133. doi: 10.1371/journal.pone.0006133.


Genome-wide detection of hybrid genes with multiple components in human.

Tzeng YH, Wang SS.

BMC Res Notes. 2009 May 6;2:75. doi: 10.1186/1756-0500-2-75.

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