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Items: 1 to 20 of 341


Novel ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit.

Rozman Grinberg I, Lundin D, Hasan M, Crona M, Jonna VR, Loderer C, Sahlin M, Markova N, Borovok I, Berggren G, Hofer A, Logan DT, Sjöberg BM.

Elife. 2018 Feb 1;7. pii: e31529. doi: 10.7554/eLife.31529.


Comprehensive Genome-Wide Classification Reveals That Many Plant-Specific Transcription Factors Evolved in Streptophyte Algae.

Wilhelmsson PKI, Mühlich C, Ullrich KK, Rensing SA.

Genome Biol Evol. 2017 Dec 1;9(12):3384-3397. doi: 10.1093/gbe/evx258.


Phylogenetic Distribution of CMP-Neu5Ac Hydroxylase (CMAH), the Enzyme Synthetizing the Proinflammatory Human Xenoantigen Neu5Gc.

Peri S, Kulkarni A, Feyertag F, Berninsone PM, Alvarez-Ponce D.

Genome Biol Evol. 2018 Jan 1;10(1):207-219. doi: 10.1093/gbe/evx251.


Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria.

Cerutti F, Mallet L, Painset A, Hoede C, Moisan A, Bécavin C, Duval M, Dussurget O, Cossart P, Gaspin C, Chiapello H.

BMC Genomics. 2017 Nov 16;18(1):882. doi: 10.1186/s12864-017-4242-0.


TurboFold II: RNA structural alignment and secondary structure prediction informed by multiple homologs.

Tan Z, Fu Y, Sharma G, Mathews DH.

Nucleic Acids Res. 2017 Nov 16;45(20):11570-11581. doi: 10.1093/nar/gkx815.


Chlorophyte aspartyl aminopeptidases: Ancient origins, expanded families, new locations, and secondary functions.

Park SY, Scranton MA, Stajich JE, Yee A, Walling LL.

PLoS One. 2017 Oct 12;12(10):e0185492. doi: 10.1371/journal.pone.0185492. eCollection 2017.


A unique cysteine-rich zinc finger domain present in a majority of class II ribonucleotide reductases mediates catalytic turnover.

Loderer C, Jonna VR, Crona M, Rozman Grinberg I, Sahlin M, Hofer A, Lundin D, Sjöberg BM.

J Biol Chem. 2017 Nov 17;292(46):19044-19054. doi: 10.1074/jbc.M117.806331. Epub 2017 Oct 2.


The transcription factor CHOP, an effector of the integrated stress response, is required for host sensitivity to the fungal intracellular pathogen Histoplasma capsulatum.

English BC, Van Prooyen N, Örd T, Örd T, Sil A.

PLoS Pathog. 2017 Sep 27;13(9):e1006589. doi: 10.1371/journal.ppat.1006589. eCollection 2017 Sep.


Challenges and advances for transcriptome assembly in non-model species.

Ungaro A, Pech N, Martin JF, McCairns RJS, Mévy JP, Chappaz R, Gilles A.

PLoS One. 2017 Sep 20;12(9):e0185020. doi: 10.1371/journal.pone.0185020. eCollection 2017.


Position Matters: Network Centrality Considerably Impacts Rates of Protein Evolution in the Human Protein-Protein Interaction Network.

Alvarez-Ponce D, Feyertag F, Chakraborty S.

Genome Biol Evol. 2017 Jun 1;9(6):1742-1756. doi: 10.1093/gbe/evx117.


Bacterial Foraging Optimization -Genetic Algorithm for Multiple Sequence Alignment with Multi-Objectives.

Manikandan P, Ramyachitra D.

Sci Rep. 2017 Aug 18;7(1):8833. doi: 10.1038/s41598-017-09499-1.


Modeling RNA Secondary Structure with Sequence Comparison and Experimental Mapping Data.

Tan Z, Sharma G, Mathews DH.

Biophys J. 2017 Jul 25;113(2):330-338. doi: 10.1016/j.bpj.2017.06.039. Epub 2017 Jul 20.


Phylogenetic and structural comparisons of the three types of methyl-coenzyme M reductase from Methanococcales and Methanobacteriales.

Wagner T, Wegner CE, Kahnt J, Ermler U, Shima S.

J Bacteriol. 2017 May 30. pii: JB.00197-17. doi: 10.1128/JB.00197-17. [Epub ahead of print]


Solving the master equation for Indels.

Holmes IH.

BMC Bioinformatics. 2017 May 12;18(1):255. doi: 10.1186/s12859-017-1665-1.


Listeriomics: an Interactive Web Platform for Systems Biology of Listeria.

Bécavin C, Koutero M, Tchitchek N, Cerutti F, Lechat P, Maillet N, Hoede C, Chiapello H, Gaspin C, Cossart P.

mSystems. 2017 Mar 14;2(2). pii: e00186-16. doi: 10.1128/mSystems.00186-16. eCollection 2017 Mar-Apr.


QuickProbs 2: Towards rapid construction of high-quality alignments of large protein families.

Gudyś A, Deorowicz S.

Sci Rep. 2017 Jan 31;7:41553. doi: 10.1038/srep41553.


Evolution of protein N-glycosylation process in Golgi apparatus which shapes diversity of protein N-glycan structures in plants, animals and fungi.

Wang P, Wang H, Gai J, Tian X, Zhang X, Lv Y, Jian Y.

Sci Rep. 2017 Jan 11;7:40301. doi: 10.1038/srep40301.


Evolutionary conservation and in vitro reconstitution of microsporidian iron-sulfur cluster biosynthesis.

Freibert SA, Goldberg AV, Hacker C, Molik S, Dean P, Williams TA, Nakjang S, Long S, Sendra K, Bill E, Heinz E, Hirt RP, Lucocq JM, Embley TM, Lill R.

Nat Commun. 2017 Jan 4;8:13932. doi: 10.1038/ncomms13932.


IBBOMSA: An Improved Biogeography-based Approach for Multiple Sequence Alignment.

Yadav RK, Banka H.

Evol Bioinform Online. 2016 Oct 27;12:237-246. eCollection 2016.


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