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Items: 1 to 20 of 621

1.

EPMDA: an expression-profile based computational model for microRNA-disease association prediction.

Huang YA, You ZH, Li LP, Huang ZA, Xiang LX, Li XF, Lv LT.

Oncotarget. 2017 Jun 28;8(50):87033-87043. doi: 10.18632/oncotarget.18788. eCollection 2017 Oct 20.

2.

Non-coding RNAs in Mesenchymal Stem Cell-Derived Extracellular Vesicles: Deciphering Regulatory Roles in Stem Cell Potency, Inflammatory Resolve, and Tissue Regeneration.

Fatima F, Ekstrom K, Nazarenko I, Maugeri M, Valadi H, Hill AF, Camussi G, Nawaz M.

Front Genet. 2017 Oct 25;8:161. doi: 10.3389/fgene.2017.00161. eCollection 2017. Review.

3.

Cancer cell line specific co-factors modulate the FOXM1 cistrome.

Wang Y, Ung MH, Xia T, Cheng W, Cheng C.

Oncotarget. 2017 Aug 24;8(44):76498-76515. doi: 10.18632/oncotarget.20405. eCollection 2017 Sep 29.

4.

Evaluating phenotype-driven approaches for genetic diagnoses from exomes in a clinical setting.

Pengelly RJ, Alom T, Zhang Z, Hunt D, Ennis S, Collins A.

Sci Rep. 2017 Oct 18;7(1):13509. doi: 10.1038/s41598-017-13841-y.

5.

Genome-wide open chromatin regions and their effects on the regulation of silk protein genes in Bombyx mori.

Zhang Q, Cheng T, Jin S, Guo Y, Wu Y, Liu D, Xu X, Sun Y, Li Z, He H, Xia Q.

Sci Rep. 2017 Oct 10;7(1):12919. doi: 10.1038/s41598-017-13186-6.

6.

Reconstructing cancer drug response networks using multitask learning.

Ruffalo M, Stojanov P, Pillutla VK, Varma R, Bar-Joseph Z.

BMC Syst Biol. 2017 Oct 10;11(1):96. doi: 10.1186/s12918-017-0471-8.

7.

Incorporating genomic, transcriptomic and clinical data: a prognostic and stem cell-like MYC and PRC imbalance in high-risk neuroblastoma.

Yang XH, Tang F, Shin J, Cunningham JM.

BMC Syst Biol. 2017 Oct 3;11(Suppl 5):92. doi: 10.1186/s12918-017-0466-5.

8.

Transcriptome analysis of developing lens reveals abundance of novel transcripts and extensive splicing alterations.

Srivastava R, Budak G, Dash S, Lachke SA, Janga SC.

Sci Rep. 2017 Sep 14;7(1):11572. doi: 10.1038/s41598-017-10615-4.

9.

Composition and dosage of a multipartite enhancer cluster control developmental expression of Ihh (Indian hedgehog).

Will AJ, Cova G, Osterwalder M, Chan WL, Wittler L, Brieske N, Heinrich V, de Villartay JP, Vingron M, Klopocki E, Visel A, Lupiáñez DG, Mundlos S.

Nat Genet. 2017 Oct;49(10):1539-1545. doi: 10.1038/ng.3939. Epub 2017 Aug 28.

PMID:
28846100
10.

Assessing the model transferability for prediction of transcription factor binding sites based on chromatin accessibility.

Liu S, Zibetti C, Wan J, Wang G, Blackshaw S, Qian J.

BMC Bioinformatics. 2017 Jul 27;18(1):355. doi: 10.1186/s12859-017-1769-7.

11.

Genome-wide pathway analysis identifies VEGF pathway association with oral ulceration in systemic lupus erythematosus.

Aterido A, Julià A, Carreira P, Blanco R, López-Longo JJ, Venegas JJP, Olivé À, Andreu JL, Aguirre-Zamorano MÁ, Vela P, Nolla JM, Marenco-de la Fuente JL, Zea A, Pego JM, Freire M, Díez E, López-Lasanta M, López-Corbeto M, Palau N, Tortosa R, Gelpí JL, Absher D, Myers RM, Fernández-Nebro A, Marsal S.

Arthritis Res Ther. 2017 Jun 15;19(1):138. doi: 10.1186/s13075-017-1345-6.

12.

Personalized Medicine: New Perspectives for the Diagnosis and the Treatment of Renal Diseases.

Gluba-Brzózka A, Franczyk B, Olszewski R, Banach M, Rysz J.

Int J Mol Sci. 2017 Jun 10;18(6). pii: E1248. doi: 10.3390/ijms18061248. Review.

13.

Building dialogues between clinical and biomedical research through cross-species collaborations.

Chao HT, Liu L, Bellen HJ.

Semin Cell Dev Biol. 2017 Oct;70:49-57. doi: 10.1016/j.semcdb.2017.05.022. Epub 2017 Jun 1. Review.

PMID:
28579453
14.

A computational approach for the functional classification of the epigenome.

Gandolfi F, Tramontano A.

Epigenetics Chromatin. 2017 May 15;10:26. doi: 10.1186/s13072-017-0131-7. eCollection 2017.

15.

Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data.

Zamanighomi M, Lin Z, Wang Y, Jiang R, Wong WH.

Nucleic Acids Res. 2017 Jun 2;45(10):5666-5677. doi: 10.1093/nar/gkx358.

16.

Deregulation of α-synuclein in Parkinson's disease: Insight from epigenetic structure and transcriptional regulation of SNCA.

Guhathakurta S, Bok E, Evangelista BA, Kim YS.

Prog Neurobiol. 2017 Jul;154:21-36. doi: 10.1016/j.pneurobio.2017.04.004. Epub 2017 Apr 23. Review.

PMID:
28445713
17.

A ChIP-Seq Data Analysis Pipeline Based on Bioconductor Packages.

Park SJ, Kim JH, Yoon BH, Kim SY.

Genomics Inform. 2017 Mar;15(1):11-18. doi: 10.5808/GI.2017.15.1.11. Epub 2017 Mar 29.

18.

Hippo pathway mediates resistance to cytotoxic drugs.

Gujral TS, Kirschner MW.

Proc Natl Acad Sci U S A. 2017 May 2;114(18):E3729-E3738. doi: 10.1073/pnas.1703096114. Epub 2017 Apr 17.

19.

L1000CDS2: LINCS L1000 characteristic direction signatures search engine.

Duan Q, Reid SP, Clark NR, Wang Z, Fernandez NF, Rouillard AD, Readhead B, Tritsch SR, Hodos R, Hafner M, Niepel M, Sorger PK, Dudley JT, Bavari S, Panchal RG, Ma'ayan A.

NPJ Syst Biol Appl. 2016;2. pii: 16015. doi: 10.1038/npjsba.2016.15. Epub 2016 Aug 4.

20.

c-Myc Antagonises the Transcriptional Activity of the Androgen Receptor in Prostate Cancer Affecting Key Gene Networks.

Barfeld SJ, Urbanucci A, Itkonen HM, Fazli L, Hicks JL, Thiede B, Rennie PS, Yegnasubramanian S, DeMarzo AM, Mills IG.

EBioMedicine. 2017 Apr;18:83-93. doi: 10.1016/j.ebiom.2017.04.006. Epub 2017 Apr 5.

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