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Items: 1 to 20 of 56

1.

Similar Ratios of Introns to Intergenic Sequence across Animal Genomes.

Francis WR, Wörheide G.

Genome Biol Evol. 2017 Jun 1;9(6):1582-1598. doi: 10.1093/gbe/evx103.

2.

Dynamics of genome size evolution in birds and mammals.

Kapusta A, Suh A, Feschotte C.

Proc Natl Acad Sci U S A. 2017 Feb 21;114(8):E1460-E1469. doi: 10.1073/pnas.1616702114. Epub 2017 Feb 8.

3.

Analysis of 5' gene regions reveals extraordinary conservation of novel non-coding sequences in a wide range of animals.

Davies NJ, Krusche P, Tauber E, Ott S.

BMC Evol Biol. 2015 Oct 19;15:227. doi: 10.1186/s12862-015-0499-6.

4.

Prioritizing Clinically Relevant Copy Number Variation from Genetic Interactions and Gene Function Data.

Foong J, Girdea M, Stavropoulos J, Brudno M.

PLoS One. 2015 Oct 5;10(10):e0139656. doi: 10.1371/journal.pone.0139656. eCollection 2015.

5.

Distinct polymer physics principles govern chromatin dynamics in mouse and Drosophila topological domains.

Ea V, Sexton T, Gostan T, Herviou L, Baudement MO, Zhang Y, Berlivet S, Le Lay-Taha MN, Cathala G, Lesne A, Victor JM, Fan Y, Cavalli G, Forné T.

BMC Genomics. 2015 Aug 15;16:607. doi: 10.1186/s12864-015-1786-8.

6.

An evolutionary classification of genomic function.

Graur D, Zheng Y, Azevedo RB.

Genome Biol Evol. 2015 Jan 28;7(3):642-5. doi: 10.1093/gbe/evv021. Review.

7.

Divergent evolutionary rates in vertebrate and mammalian specific conserved non-coding elements (CNEs) in echolocating mammals.

Davies KT, Tsagkogeorga G, Rossiter SJ.

BMC Evol Biol. 2014 Dec 19;14:261. doi: 10.1186/s12862-014-0261-5.

8.

Longevity and plasticity of CFTR provide an argument for noncanonical SNP organization in hominid DNA.

Hill AE, Plyler ZE, Tiwari H, Patki A, Tully JP, McAtee CW, Moseley LA, Sorscher EJ.

PLoS One. 2014 Oct 28;9(10):e109186. doi: 10.1371/journal.pone.0109186. eCollection 2014.

9.

Disruption of Visc-2, a Brain-Expressed Conserved Long Noncoding RNA, Does Not Elicit an Overt Anatomical or Behavioral Phenotype.

Oliver PL, Chodroff RA, Gosal A, Edwards B, Cheung AF, Gomez-Rodriguez J, Elliot G, Garrett LJ, Lickiss T, Szele F, Green ED, Molnár Z, Ponting CP.

Cereb Cortex. 2015 Oct;25(10):3572-85. doi: 10.1093/cercor/bhu196. Epub 2014 Sep 10.

10.

Expression of transcribed ultraconserved regions of genome in rat cerebral cortex.

Mehta SL, Dharap A, Vemuganti R.

Neurochem Int. 2014 Nov;77:86-93. doi: 10.1016/j.neuint.2014.06.006. Epub 2014 Jun 20.

11.

Quantitative analysis of genomic element interactions by molecular colony technique.

Gavrilov AA, Chetverina HV, Chermnykh ES, Razin SV, Chetverin AB.

Nucleic Acids Res. 2014 Mar;42(5):e36. doi: 10.1093/nar/gkt1322. Epub 2013 Dec 24.

12.

Comparison of ultra-conserved elements in drosophilids and vertebrates.

Makunin IV, Shloma VV, Stephen SJ, Pheasant M, Belyakin SN.

PLoS One. 2013 Dec 13;8(12):e82362. doi: 10.1371/journal.pone.0082362. eCollection 2013.

13.

Disruption of autoregulatory feedback by a mutation in a remote, ultraconserved PAX6 enhancer causes aniridia.

Bhatia S, Bengani H, Fish M, Brown A, Divizia MT, de Marco R, Damante G, Grainger R, van Heyningen V, Kleinjan DA.

Am J Hum Genet. 2013 Dec 5;93(6):1126-34. doi: 10.1016/j.ajhg.2013.10.028. Epub 2013 Nov 27. Review.

14.

Heterogeneous tempo and mode of conserved noncoding sequence evolution among four mammalian orders.

Babarinde IA, Saitou N.

Genome Biol Evol. 2013;5(12):2330-43. doi: 10.1093/gbe/evt177.

15.

Reintroducing domesticated wild mice to sociality induces adaptive transgenerational effects on MUP expression.

Nelson AC, Cauceglia JW, Merkley SD, Youngson NA, Oler AJ, Nelson RJ, Cairns BR, Whitelaw E, Potts WK.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19848-53. doi: 10.1073/pnas.1310427110. Epub 2013 Nov 18.

16.

Advances in biotechnology and informatics to link variation in the genome to phenotypes in plants and animals.

Appels R, Barrero R, Bellgard M.

Funct Integr Genomics. 2013 Mar;13(1):1-9. doi: 10.1007/s10142-013-0319-2. Epub 2013 Mar 15. Review.

17.

Differences in enhancer activity in mouse and zebrafish reporter assays are often associated with changes in gene expression.

Ariza-Cosano A, Visel A, Pennacchio LA, Fraser HB, Gómez-Skarmeta JL, Irimia M, Bessa J.

BMC Genomics. 2012 Dec 19;13:713. doi: 10.1186/1471-2164-13-713.

18.

NuRD suppresses pluripotency gene expression to promote transcriptional heterogeneity and lineage commitment.

Reynolds N, Latos P, Hynes-Allen A, Loos R, Leaford D, O'Shaughnessy A, Mosaku O, Signolet J, Brennecke P, Kalkan T, Costello I, Humphreys P, Mansfield W, Nakagawa K, Strouboulis J, Behrens A, Bertone P, Hendrich B.

Cell Stem Cell. 2012 May 4;10(5):583-94. doi: 10.1016/j.stem.2012.02.020.

19.

Lens development depends on a pair of highly conserved Sox21 regulatory elements.

Pauls S, Smith SF, Elgar G.

Dev Biol. 2012 May 1;365(1):310-8. doi: 10.1016/j.ydbio.2012.02.025. Epub 2012 Feb 24.

20.

Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3' UTRs.

Niazi F, Valadkhan S.

RNA. 2012 Apr;18(4):825-43. doi: 10.1261/rna.029520.111. Epub 2012 Feb 23.

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