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Increasing quality, throughput and speed of sample preparation for strand-specific messenger RNA sequencing.

Haile S, Corbett RD, MacLeod T, Bilobram S, Smailus D, Tsao P, Kirk H, McDonald H, Pandoh P, Bala M, Hirst M, Miller D, Moore RA, Mungall AJ, Schein J, Coope RJ, Ma Y, Zhao Y, Holt RA, Jones SJ, Marra MA.

BMC Genomics. 2017 Jul 5;18(1):515. doi: 10.1186/s12864-017-3900-6.


Diurnal Oscillations in Liver Mass and Cell Size Accompany Ribosome Assembly Cycles.

Sinturel F, Gerber A, Mauvoisin D, Wang J, Gatfield D, Stubblefield JJ, Green CB, Gachon F, Schibler U.

Cell. 2017 May 4;169(4):651-663.e14. doi: 10.1016/j.cell.2017.04.015.


RNA interactome capture in yeast.

Beckmann BM.

Methods. 2017 Apr 15;118-119:82-92. doi: 10.1016/j.ymeth.2016.12.008. Epub 2016 Dec 16.


Altered RNA processing and export lead to retention of mRNAs near transcription sites and nuclear pore complexes or within the nucleolus.

Paul B, Montpetit B.

Mol Biol Cell. 2016 Sep 1;27(17):2742-56. doi: 10.1091/mbc.E16-04-0244. Epub 2016 Jul 6.


The role of sequence context, nucleotide pool balance and stress in 2'-deoxynucleotide misincorporation in viral, bacterial and mammalian RNA.

Wang J, Dong H, Chionh YH, McBee ME, Sirirungruang S, Cunningham RP, Shi PY, Dedon PC.

Nucleic Acids Res. 2016 Oct 14;44(18):8962-8975. Epub 2016 Jun 30.


The cytoplasmic mRNA degradation factor Pat1 is required for rRNA processing.

Muppavarapu M, Huch S, Nissan T.

RNA Biol. 2016;13(4):455-65. doi: 10.1080/15476286.2016.1154253. Epub 2016 Feb 26.


Uridylation and adenylation of RNAs.

Song J, Song J, Mo B, Chen X.

Sci China Life Sci. 2015 Nov;58(11):1057-66. doi: 10.1007/s11427-015-4954-9. Epub 2015 Oct 27. Review.


New gene models and alternative splicing in the maize pathogen Colletotrichum graminicola revealed by RNA-Seq analysis.

Schliebner I, Becher R, Hempel M, Deising HB, Horbach R.

BMC Genomics. 2014 Oct 2;15:842. doi: 10.1186/1471-2164-15-842.


Arabidopsis RRP6L1 and RRP6L2 function in FLOWERING LOCUS C silencing via regulation of antisense RNA synthesis.

Shin JH, Chekanova JA.

PLoS Genet. 2014 Sep 11;10(9):e1004612. doi: 10.1371/journal.pgen.1004612. eCollection 2014 Sep.


Genome-wide identification of transcript start and end sites by transcript isoform sequencing.

Pelechano V, Wei W, Jakob P, Steinmetz LM.

Nat Protoc. 2014 Jul;9(7):1740-59. doi: 10.1038/nprot.2014.121. Epub 2014 Jun 26.


The RNA exosome affects iron response and sensitivity to oxidative stress.

Tsanova B, Spatrick P, Jacobson A, van Hoof A.

RNA. 2014 Jul;20(7):1057-67. doi: 10.1261/rna.043257.113. Epub 2014 May 23.


Ribosome biogenesis in the yeast Saccharomyces cerevisiae.

Woolford JL Jr, Baserga SJ.

Genetics. 2013 Nov;195(3):643-81. doi: 10.1534/genetics.113.153197. Review.


Genome-wide analysis of poly(A) site selection in Schizosaccharomyces pombe.

Schlackow M, Marguerat S, Proudfoot NJ, Bähler J, Erban R, Gullerova M.

RNA. 2013 Dec;19(12):1617-31. doi: 10.1261/rna.040675.113. Epub 2013 Oct 23.


Assembly of the yeast exoribonuclease Rrp6 with its associated cofactor Rrp47 occurs in the nucleus and is critical for the controlled expression of Rrp47.

Feigenbutz M, Jones R, Besong TM, Harding SE, Mitchell P.

J Biol Chem. 2013 May 31;288(22):15959-70. doi: 10.1074/jbc.M112.445759. Epub 2013 Apr 11.


The SWI/SNF chromatin remodeling complex influences transcription by RNA polymerase I in Saccharomyces cerevisiae.

Zhang Y, Anderson SJ, French SL, Sikes ML, Viktorovskaya OV, Huband J, Holcomb K, Hartman JL 4th, Beyer AL, Schneider DA.

PLoS One. 2013;8(2):e56793. doi: 10.1371/journal.pone.0056793. Epub 2013 Feb 20.


Nuclear RNA surveillance: role of TRAMP in controlling exosome specificity.

Schmidt K, Butler JS.

Wiley Interdiscip Rev RNA. 2013 Mar-Apr;4(2):217-31. doi: 10.1002/wrna.1155. Epub 2013 Feb 15. Review.


Air proteins control differential TRAMP substrate specificity for nuclear RNA surveillance.

Schmidt K, Xu Z, Mathews DH, Butler JS.

RNA. 2012 Oct;18(10):1934-45. doi: 10.1261/rna.033431.112. Epub 2012 Aug 24.


Maf1-mediated repression of RNA polymerase III transcription inhibits tRNA degradation via RTD pathway.

Turowski TW, Karkusiewicz I, Kowal J, Boguta M.

RNA. 2012 Oct;18(10):1823-32. doi: 10.1261/rna.033597.112. Epub 2012 Aug 23.


RNA degradation in Saccharomyces cerevisae.

Parker R.

Genetics. 2012 Jul;191(3):671-702. doi: 10.1534/genetics.111.137265. Review.


New kid on the ID block: neural functions of the Nab2/ZC3H14 class of Cys₃His tandem zinc-finger polyadenosine RNA binding proteins.

Kelly S, Pak C, Garshasbi M, Kuss A, Corbett AH, Moberg K.

RNA Biol. 2012 May;9(5):555-62. doi: 10.4161/rna.20187. Epub 2012 May 1.

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