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Items: 20


Molecular Effects of Polymorphism in the 3'UTR of Unc-5 homolog C Associated with Conception Rate in Holsteins.

Sugimoto M, Gotoh Y, Kawahara T, Sugimoto Y.

PLoS One. 2015 Jul 6;10(7):e0131283. doi: 10.1371/journal.pone.0131283. eCollection 2015.


Silencing efficacy prediction: a retrospective study on target mRNA features.

Pascut D, Bedogni G, Tiribelli C.

Biosci Rep. 2015 Mar 31;35(2). pii: e00185. doi: 10.1042/BSR20140147.


Theranostic nanoparticles based on bioreducible polyethylenimine-coated iron oxide for reduction-responsive gene delivery and magnetic resonance imaging.

Li D, Tang X, Pulli B, Lin C, Zhao P, Cheng J, Lv Z, Yuan X, Luo Q, Cai H, Ye M.

Int J Nanomedicine. 2014 Jul 10;9:3347-61. doi: 10.2147/IJN.S61463. eCollection 2014.


Recent advances in RNA interference therapeutics for CNS diseases.

Ramachandran PS, Keiser MS, Davidson BL.

Neurotherapeutics. 2013 Jul;10(3):473-85. doi: 10.1007/s13311-013-0183-8. Review.


Whole-genome thermodynamic analysis reduces siRNA off-target effects.

Chen X, Liu P, Chou HH.

PLoS One. 2013;8(3):e58326. doi: 10.1371/journal.pone.0058326. Epub 2013 Mar 6.


shRNAPred (version 1.0): An open source and standalone software for short hairpin RNA (shRNA) prediction.

Singh N, Sahu TK, Rao AR, Mohapatra T.

Bioinformation. 2012;8(13):629-33. doi: 10.6026/97320630008629. Epub 2012 Jul 6.


Reconsideration of in-silico siRNA design based on feature selection: a cross-platform data integration perspective.

Liu Q, Zhou H, Cui J, Cao Z, Xu Y.

PLoS One. 2012;7(5):e37879. doi: 10.1371/journal.pone.0037879. Epub 2012 May 24.


RNA interference for improving the outcome of islet transplantation.

Li F, Mahato RI.

Adv Drug Deliv Rev. 2011 Jan-Feb;63(1-2):47-68. doi: 10.1016/j.addr.2010.11.003. Epub 2010 Dec 13. Review.


Amyloid precursor protein cleavage-dependent and -independent axonal degeneration programs share a common nicotinamide mononucleotide adenylyltransferase 1-sensitive pathway.

Vohra BP, Sasaki Y, Miller BR, Chang J, DiAntonio A, Milbrandt J.

J Neurosci. 2010 Oct 13;30(41):13729-38. doi: 10.1523/JNEUROSCI.2939-10.2010.


Multi-task learning for cross-platform siRNA efficacy prediction: an in-silico study.

Liu Q, Xu Q, Zheng VW, Xue H, Cao Z, Yang Q.

BMC Bioinformatics. 2010 Apr 10;11:181. doi: 10.1186/1471-2105-11-181.


BCL6 modulates tonic BCR signaling in diffuse large B-cell lymphomas by repressing the SYK phosphatase, PTPROt.

Juszczynski P, Chen L, O'Donnell E, Polo JM, Ranuncolo SM, Dalla-Favera R, Melnick A, Shipp MA.

Blood. 2009 Dec 17;114(26):5315-21. doi: 10.1182/blood-2009-02-204362. Epub 2009 Oct 23.


Vector-based siRNA delivery strategies for high-throughput screening of novel target genes.

Chen M, Du Q, Zhang HY, Wahlestedt C, Liang Z.

J RNAi Gene Silencing. 2005 Jul 27;1(1):5-11.


siRecords: a database of mammalian RNAi experiments and efficacies.

Ren Y, Gong W, Zhou H, Wang Y, Xiao F, Li T.

Nucleic Acids Res. 2009 Jan;37(Database issue):D146-9. doi: 10.1093/nar/gkn817. Epub 2008 Nov 7.


AsiDesigner: exon-based siRNA design server considering alternative splicing.

Park YK, Park SM, Choi YC, Lee D, Won M, Kim YJ.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W97-103. doi: 10.1093/nar/gkn280. Epub 2008 May 14.


Comparison of approaches for rational siRNA design leading to a new efficient and transparent method.

Matveeva O, Nechipurenko Y, Rossi L, Moore B, Saetrom P, Ogurtsov AY, Atkins JF, Shabalina SA.

Nucleic Acids Res. 2007;35(8):e63. Epub 2007 Apr 10.


Integrated siRNA design based on surveying of features associated with high RNAi effectiveness.

Gong W, Ren Y, Xu Q, Wang Y, Lin D, Zhou H, Li T.

BMC Bioinformatics. 2006 Nov 27;7:516.


Essential notes regarding the design of functional siRNAs for efficient mammalian RNAi.

Ui-Tei K, Naito Y, Saigo K.

J Biomed Biotechnol. 2006;2006(4):65052.


Demonstration of two novel methods for predicting functional siRNA efficiency.

Jia P, Shi T, Cai Y, Li Y.

BMC Bioinformatics. 2006 May 29;7:271.


Genome-wide selection of unique and valid oligonucleotides.

Hyyrö H, Juhola M, Vihinen M.

Nucleic Acids Res. 2005 Jul 26;33(13):e115.


siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference.

Naito Y, Yamada T, Ui-Tei K, Morishita S, Saigo K.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W124-9.

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