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Items: 1 to 20 of 465


Exploring the ecological function of CRISPR-Cas virus defense.

Lundgren M.

Commun Integr Biol. 2016 Aug 11;9(5):e1216740.


Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes.

White RA 3rd, Bottos EM, Roy Chowdhury T, Zucker JD, Brislawn CJ, Nicora CD, Fansler SJ, Glaesemann KR, Glass K, Jansson JK.

mSystems. 2016 Jun 28;1(3). pii: e00045-16.


Genetic signatures of ecological diversity along an urbanization gradient.

Kelly RP, O'Donnell JL, Lowell NC, Shelton AO, Samhouri JF, Hennessey SM, Feist BE, Williams GD.

PeerJ. 2016 Sep 13;4:e2444. doi: 10.7717/peerj.2444.


Comparative Genomics of the Extreme Acidophile Acidithiobacillus thiooxidans Reveals Intraspecific Divergence and Niche Adaptation.

Zhang X, Feng X, Tao J, Ma L, Xiao Y, Liang Y, Liu X, Yin H.

Int J Mol Sci. 2016 Aug 19;17(8). pii: E1355. doi: 10.3390/ijms17081355.


MBMC: An Effective Markov Chain Approach for Binning Metagenomic Reads from Environmental Shotgun Sequencing Projects.

Wang Y, Hu H, Li X.

OMICS. 2016 Aug;20(8):470-9. doi: 10.1089/omi.2016.0081.


Denitrification and Nitrate-Dependent Fe(II) Oxidation in Various Pseudogulbenkiania Strains.

Ishii S, Joikai K, Otsuka S, Senoo K, Okabe S.

Microbes Environ. 2016 Sep 29;31(3):293-8. doi: 10.1264/jsme2.ME16001.


Functional profiling of cyanobacterial genomes and its role in ecological adaptations.

Prabha R, Singh DP, Somvanshi P, Rai A.

Genom Data. 2016 Jun 20;9:89-94. doi: 10.1016/j.gdata.2016.06.005.


GUTSS: An Alignment-Free Sequence Comparison Method for Use in Human Intestinal Microbiome and Fecal Microbiota Transplantation Analysis.

Brittnacher MJ, Heltshe SL, Hayden HS, Radey MC, Weiss EJ, Damman CJ, Zisman TL, Suskind DL, Miller SI.

PLoS One. 2016 Jul 8;11(7):e0158897. doi: 10.1371/journal.pone.0158897.


Metagenomics and Bioinformatics in Microbial Ecology: Current Status and Beyond.

Hiraoka S, Yang CC, Iwasaki W.

Microbes Environ. 2016 Sep 29;31(3):204-12. doi: 10.1264/jsme2.ME16024.


Gene Loss and Horizontal Gene Transfer Contributed to the Genome Evolution of the Extreme Acidophile "Ferrovum".

Ullrich SR, González C, Poehlein A, Tischler JS, Daniel R, Schlömann M, Holmes DS, Mühling M.

Front Microbiol. 2016 May 31;7:797. doi: 10.3389/fmicb.2016.00797.


Effects of Lipid Tethering in Extremophile-Inspired Membranes on H(+)/OH(-) Flux at Room Temperature.

Schroeder TB, Leriche G, Koyanagi T, Johnson MA, Haengel KN, Eggenberger OM, Wang CL, Kim YH, Diraviyam K, Sept D, Yang J, Mayer M.

Biophys J. 2016 Jun 7;110(11):2430-40. doi: 10.1016/j.bpj.2016.04.044.


Cellular adhesiveness and cellulolytic capacity in Anaerolineae revealed by omics-based genome interpretation.

Xia Y, Wang Y, Wang Y, Chin FY, Zhang T.

Biotechnol Biofuels. 2016 May 23;9:111. doi: 10.1186/s13068-016-0524-z.


Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database.

Bissett A, Fitzgerald A, Meintjes T, Mele PM, Reith F, Dennis PG, Breed MF, Brown B, Brown MV, Brugger J, Byrne M, Caddy-Retalic S, Carmody B, Coates DJ, Correa C, Ferrari BC, Gupta VV, Hamonts K, Haslem A, Hugenholtz P, Karan M, Koval J, Lowe AJ, Macdonald S, McGrath L, Martin D, Morgan M, North KI, Paungfoo-Lonhienne C, Pendall E, Phillips L, Pirzl R, Powell JR, Ragan MA, Schmidt S, Seymour N, Snape I, Stephen JR, Stevens M, Tinning M, Williams K, Yeoh YK, Zammit CM, Young A.

Gigascience. 2016 May 18;5:21. doi: 10.1186/s13742-016-0126-5.


Complete genome sequence of 'Halanaeroarchaeum sulfurireducens' M27-SA2, a sulfur-reducing and acetate-oxidizing haloarchaeon from the deep-sea hypersaline anoxic lake Medee.

Messina E, Sorokin DY, Kublanov IV, Toshchakov S, Lopatina A, Arcadi E, Smedile F, La Spada G, La Cono V, Yakimov MM.

Stand Genomic Sci. 2016 May 13;11:35. doi: 10.1186/s40793-016-0155-9.


Diversity and Metabolic Potentials of Subsurface Crustal Microorganisms from the Western Flank of the Mid-Atlantic Ridge.

Zhang X, Feng X, Wang F.

Front Microbiol. 2016 Mar 18;7:363. doi: 10.3389/fmicb.2016.00363.


Recovering complete and draft population genomes from metagenome datasets.

Sangwan N, Xia F, Gilbert JA.

Microbiome. 2016 Mar 8;4:8. doi: 10.1186/s40168-016-0154-5. Review.


Capturing the most wanted taxa through cross-sample correlations.

Almeida M, Pop M, Le Chatelier E, Prifti E, Pons N, Ghozlane A, Ehrlich SD.

ISME J. 2016 Oct;10(10):2459-67. doi: 10.1038/ismej.2016.35.

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