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Items: 1 to 20 of 247


AUC-Maximized Deep Convolutional Neural Fields for Protein Sequence Labeling.

Wang S, Sun S, Xu J.

Mach Learn Knowl Discov Databases. 2016 Sep;9852:1-16. doi: 10.1007/978-3-319-46227-1_1. Epub 2016 Sep 4.


The n→π* Interaction.

Newberry RW, Raines RT.

Acc Chem Res. 2017 Aug 15;50(8):1838-1846. doi: 10.1021/acs.accounts.7b00121. Epub 2017 Jul 23.


Modulation of polypeptide conformation through donor-acceptor transformation of side-chain hydrogen bonding ligands.

Song Z, Mansbach RA, He H, Shih KC, Baumgartner R, Zheng N, Ba X, Huang Y, Mani D, Liu Y, Lin Y, Nieh MP, Ferguson AL, Yin L, Cheng J.

Nat Commun. 2017 Jul 21;8(1):92. doi: 10.1038/s41467-017-00079-5.


Breaking Amides using Nickel Catalysis.

Dander JE, Garg NK.

ACS Catal. 2017 Feb 3;7(2):1413-1423. doi: 10.1021/acscatal.6b03277. Epub 2017 Jan 6.


Stereochemistry and Validation of Macromolecular Structures.

Wlodawer A.

Methods Mol Biol. 2017;1607:595-610. doi: 10.1007/978-1-4939-7000-1_24.


An exhaustive survey of regular peptide conformations using a new metric for backbone handedness (h).

Mannige RV.

PeerJ. 2017 May 16;5:e3327. doi: 10.7717/peerj.3327. eCollection 2017.


3D Printing of Biomolecular Models for Research and Pedagogy.

Da Veiga Beltrame E, Tyrwhitt-Drake J, Roy I, Shalaby R, Suckale J, Pomeranz Krummel D.

J Vis Exp. 2017 Mar 13;(121). doi: 10.3791/55427.


Trends in the Binding of Cell Penetrating Peptides to siRNA: A Molecular Docking Study.

Rathnayake PV, Gunathunge BG, Wimalasiri PN, Karunaratne DN, Ranatunga RJ.

J Biophys. 2017;2017:1059216. doi: 10.1155/2017/1059216. Epub 2017 Feb 21.


Characterization of Biomolecular Helices and Their Complementarity Using Geometric Analysis.

Hauser K, He Y, Garcia-Diaz M, Simmerling C, Coutsias E.

J Chem Inf Model. 2017 Apr 24;57(4):864-874. doi: 10.1021/acs.jcim.6b00721. Epub 2017 Apr 6.


Origination of the Protein Fold Repertoire from Oily Pluripotent Peptides.

Mannige RV.

Proteomes. 2014 Mar 25;2(2):154-168. doi: 10.3390/proteomes2020154.


Dynamic New World: Refining Our View of Protein Structure, Function and Evolution.

Mannige RV.

Proteomes. 2014 Mar 7;2(1):128-153. doi: 10.3390/proteomes2010128. Review.


Computational Approaches for Revealing the Structure of Membrane Transporters: Case Study on Bilitranslocase.

Venko K, Roy Choudhury A, Novič M.

Comput Struct Biotechnol J. 2017 Jan 31;15:232-242. doi: 10.1016/j.csbj.2017.01.008. eCollection 2017. Review.


Perplexing cooperative folding and stability of a low-sequence complexity, polyproline 2 protein lacking a hydrophobic core.

Gates ZP, Baxa MC, Yu W, Riback JA, Li H, Roux B, Kent SB, Sosnick TR.

Proc Natl Acad Sci U S A. 2017 Feb 28;114(9):2241-2246. doi: 10.1073/pnas.1609579114. Epub 2017 Feb 13.


Critical Features of Fragment Libraries for Protein Structure Prediction.

Trevizani R, Custódio FL, Dos Santos KB, Dardenne LE.

PLoS One. 2017 Jan 13;12(1):e0170131. doi: 10.1371/journal.pone.0170131. eCollection 2017.


A closer look into the α-helix basin.

Haimov B, Srebnik S.

Sci Rep. 2016 Dec 5;6:38341. doi: 10.1038/srep38341.


Evidences for Cooperative Resonance-Assisted Hydrogen Bonds in Protein Secondary Structure Analogs.

Zhou Y, Deng G, Zheng YZ, Xu J, Ashraf H, Yu ZW.

Sci Rep. 2016 Nov 16;6:36932. doi: 10.1038/srep36932.


Nickel-Catalyzed Esterification of Aliphatic Amides.

Hie L, Baker EL, Anthony SM, Desrosiers JN, Senanayake C, Garg NK.

Angew Chem Int Ed Engl. 2016 Nov 21;55(48):15129-15132. doi: 10.1002/anie.201607856. Epub 2016 Nov 4.


A prevalent intraresidue hydrogen bond stabilizes proteins.

Newberry RW, Raines RT.

Nat Chem Biol. 2016 Dec;12(12):1084-1088. doi: 10.1038/nchembio.2206. Epub 2016 Oct 17.


Structure of myosin filaments from relaxed Lethocerus flight muscle by cryo-EM at 6 Å resolution.

Hu Z, Taylor DW, Reedy MK, Edwards RJ, Taylor KA.

Sci Adv. 2016 Sep 30;2(9):e1600058. eCollection 2016 Sep.


Extension of the classical classification of β-turns.

de Brevern AG.

Sci Rep. 2016 Sep 15;6:33191. doi: 10.1038/srep33191.

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