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Items: 1 to 20 of 133

1.

Disease Risk Assessment Using a Voronoi-Based Network Analysis of Genes and Variants Scores.

Chen L, Mukerjee G, Dorfman R, Moghadas SM.

Front Genet. 2017 Mar 7;8:29. doi: 10.3389/fgene.2017.00029. eCollection 2017 Mar 7.

2.

Prediction of Protein-Protein Interactions by Evidence Combining Methods.

Chang JW, Zhou YQ, Ul Qamar MT, Chen LL, Ding YD.

Int J Mol Sci. 2016 Nov 22;17(11). pii: E1946. Review.

3.

PHOCOS: inferring multi-feature phenotypic crosstalk networks.

Deng Y, Altschuler SJ, Wu LF.

Bioinformatics. 2016 Jun 15;32(12):i44-i51. doi: 10.1093/bioinformatics/btw251.

4.

Positive Selection and Centrality in the Yeast and Fly Protein-Protein Interaction Networks.

Chakraborty S, Alvarez-Ponce D.

Biomed Res Int. 2016;2016:4658506. doi: 10.1155/2016/4658506. Epub 2016 Mar 28.

5.

A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human.

Vo TV, Das J, Meyer MJ, Cordero NA, Akturk N, Wei X, Fair BJ, Degatano AG, Fragoza R, Liu LG, Matsuyama A, Trickey M, Horibata S, Grimson A, Yamano H, Yoshida M, Roth FP, Pleiss JA, Xia Y, Yu H.

Cell. 2016 Jan 14;164(1-2):310-23. doi: 10.1016/j.cell.2015.11.037.

6.

Signal reachability facilitates characterization of probabilistic signaling networks.

Gabr H, Kahveci T.

BMC Bioinformatics. 2015;16 Suppl 17:S6. doi: 10.1186/1471-2105-16-S17-S6. Epub 2015 Dec 7.

7.

Systematic identification and correction of annotation errors in the genetic interaction map of Saccharomyces cerevisiae.

Atias N, Kupiec M, Sharan R.

Nucleic Acids Res. 2016 Mar 18;44(5):e50. doi: 10.1093/nar/gkv1284. Epub 2015 Nov 23.

8.

Using prior knowledge from cellular pathways and molecular networks for diagnostic specimen classification.

Glaab E.

Brief Bioinform. 2016 May;17(3):440-52. doi: 10.1093/bib/bbv044. Epub 2015 Jul 2.

9.

High-throughput prediction of RNA, DNA and protein binding regions mediated by intrinsic disorder.

Peng Z, Kurgan L.

Nucleic Acids Res. 2015 Oct 15;43(18):e121. doi: 10.1093/nar/gkv585. Epub 2015 Jun 24.

10.

Spotlite: web application and augmented algorithms for predicting co-complexed proteins from affinity purification--mass spectrometry data.

Goldfarb D, Hast BE, Wang W, Major MB.

J Proteome Res. 2014 Dec 5;13(12):5944-55. doi: 10.1021/pr5008416. Epub 2014 Oct 20.

11.

Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes.

Lambert JP, Tucholska M, Go C, Knight JD, Gingras AC.

J Proteomics. 2015 Apr 6;118:81-94. doi: 10.1016/j.jprot.2014.09.011. Epub 2014 Oct 2.

12.

Large scale analysis of signal reachability.

Todor A, Gabr H, Dobra A, Kahveci T.

Bioinformatics. 2014 Jun 15;30(12):i96-104. doi: 10.1093/bioinformatics/btu262.

13.

Protein-protein interaction detection: methods and analysis.

Rao VS, Srinivas K, Sujini GN, Kumar GN.

Int J Proteomics. 2014;2014:147648. doi: 10.1155/2014/147648. Epub 2014 Feb 17. Review.

14.

Reverse engineering and identification in systems biology: strategies, perspectives and challenges.

Villaverde AF, Banga JR.

J R Soc Interface. 2013 Dec 4;11(91):20130505. doi: 10.1098/rsif.2013.0505. Print 2014 Feb 6. Review.

15.

Improved network community structure improves function prediction.

Lee J, Gross SP, Lee J.

Sci Rep. 2013;3:2197. doi: 10.1038/srep02197.

16.

Novel semantic similarity measure improves an integrative approach to predicting gene functional associations.

Vafaee F, Rosu D, Broackes-Carter F, Jurisica I.

BMC Syst Biol. 2013 Mar 14;7:22. doi: 10.1186/1752-0509-7-22.

17.

PrePPI: a structure-informed database of protein-protein interactions.

Zhang QC, Petrey D, Garzón JI, Deng L, Honig B.

Nucleic Acids Res. 2013 Jan;41(Database issue):D828-33. doi: 10.1093/nar/gks1231. Epub 2012 Nov 27.

18.

Evolutionary rate and duplicability in the Arabidopsis thaliana protein-protein interaction network.

Alvarez-Ponce D, Fares MA.

Genome Biol Evol. 2012;4(12):1263-74. doi: 10.1093/gbe/evs101.

19.

Cluster-based assessment of protein-protein interaction confidence.

Kamburov A, Grossmann A, Herwig R, Stelzl U.

BMC Bioinformatics. 2012 Oct 10;13:262. doi: 10.1186/1471-2105-13-262.

20.

Enhancing the prioritization of disease-causing genes through tissue specific protein interaction networks.

Magger O, Waldman YY, Ruppin E, Sharan R.

PLoS Comput Biol. 2012;8(9):e1002690. doi: 10.1371/journal.pcbi.1002690. Epub 2012 Sep 27.

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