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Items: 12


Top-down Proteomics: Technology Advancements and Applications to Heart Diseases.

Cai W, Tucholski TM, Gregorich ZR, Ge Y.

Expert Rev Proteomics. 2016 Aug;13(8):717-30. doi: 10.1080/14789450.2016.1209414. Epub 2016 Jul 26.


Exploiting Thread-Level and Instruction-Level Parallelism to Cluster Mass Spectrometry Data using Multicore Architectures.

Saeed F, Hoffert JD, Pisitkun T, Knepper MA.

Netw Model Anal Health Inform Bioinform. 2014 Apr;3:54.


Top-down proteomics in health and disease: challenges and opportunities.

Gregorich ZR, Ge Y.

Proteomics. 2014 May;14(10):1195-210. doi: 10.1002/pmic.201300432. Review.


PhosSA: Fast and accurate phosphorylation site assignment algorithm for mass spectrometry data.

Saeed F, Pisitkun T, Hoffert JD, Rashidian S, Wang G, Gucek M, Knepper MA.

Proteome Sci. 2013 Nov 7;11(Suppl 1):S14. doi: 10.1186/1477-5956-11-S1-S14. Epub 2013 Nov 7.


An Efficient Dynamic Programming Algorithm for Phosphorylation Site Assignment of Large-Scale Mass Spectrometry Data.

Saeed F, Pisitkun T, Hoffert JD, Wang G, Gucek M, Knepper MA.

Proceedings (IEEE Int Conf Bioinformatics Biomed). 2012 Oct 4:618-625.


High-performance liquid chromatography separation and intact mass analysis of detergent-solubilized integral membrane proteins.

Berridge G, Chalk R, D'Avanzo N, Dong L, Doyle D, Kim JI, Xia X, Burgess-Brown N, Deriso A, Carpenter EP, Gileadi O.

Anal Biochem. 2011 Mar 15;410(2):272-80. doi: 10.1016/j.ab.2010.11.008. Epub 2010 Nov 17.


Identification of a chloroform-soluble membrane miniprotein in Escherichia coli and its homolog in Salmonella typhimurium.

Guan Z, Wang X, Raetz CR.

Anal Biochem. 2011 Feb 15;409(2):284-9. doi: 10.1016/j.ab.2010.10.035. Epub 2010 Nov 2.


Post-translational modifications of integral membrane proteins resolved by top-down Fourier transform mass spectrometry with collisionally activated dissociation.

Ryan CM, Souda P, Bassilian S, Ujwal R, Zhang J, Abramson J, Ping P, Durazo A, Bowie JU, Hasan SS, Baniulis D, Cramer WA, Faull KF, Whitelegge JP.

Mol Cell Proteomics. 2010 May;9(5):791-803. doi: 10.1074/mcp.M900516-MCP200. Epub 2010 Jan 21.


Rpe65 isomerase associates with membranes through an electrostatic interaction with acidic phospholipid headgroups.

Yuan Q, Kaylor JJ, Miu A, Bassilian S, Whitelegge JP, Travis GH.

J Biol Chem. 2010 Jan 8;285(2):988-99. doi: 10.1074/jbc.M109.025643. Epub 2009 Nov 5.


Identification of two SET domain proteins required for methylation of lysine residues in yeast ribosomal protein Rpl42ab.

Webb KJ, Laganowsky A, Whitelegge JP, Clarke SG.

J Biol Chem. 2008 Dec 19;283(51):35561-8. doi: 10.1074/jbc.M806006200. Epub 2008 Oct 28.


A second GDP-L-galactose phosphorylase in arabidopsis en route to vitamin C. Covalent intermediate and substrate requirements for the conserved reaction.

Linster CL, Adler LN, Webb K, Christensen KC, Brenner C, Clarke SG.

J Biol Chem. 2008 Jul 4;283(27):18483-92. doi: 10.1074/jbc.M802594200. Epub 2008 May 7.


Tube-gel digestion: a novel proteomic approach for high throughput analysis of membrane proteins.

Lu X, Zhu H.

Mol Cell Proteomics. 2005 Dec;4(12):1948-58. Epub 2005 Sep 8.

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