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Items: 8

1.

A complex-based reconstruction of the Saccharomyces cerevisiae interactome.

Wang H, Kakaradov B, Collins SR, Karotki L, Fiedler D, Shales M, Shokat KM, Walther TC, Krogan NJ, Koller D.

Mol Cell Proteomics. 2009 Jun;8(6):1361-81. doi: 10.1074/mcp.M800490-MCP200. Epub 2009 Jan 27.

2.

Modifying the DPClus algorithm for identifying protein complexes based on new topological structures.

Li M, Chen JE, Wang JX, Hu B, Chen G.

BMC Bioinformatics. 2008 Sep 25;9:398. doi: 10.1186/1471-2105-9-398.

3.

Identifying protein complexes directly from high-throughput TAP data with Markov random fields.

Rungsarityotin W, Krause R, Schödl A, Schliep A.

BMC Bioinformatics. 2007 Dec 19;8:482.

4.
5.

Network-based prediction of protein function.

Sharan R, Ulitsky I, Shamir R.

Mol Syst Biol. 2007;3:88. Epub 2007 Mar 13. Review.

6.

SemCat: semantically categorized entities for genomics.

Tanabe L, Thom LH, Matten W, Comeau DC, Wilbur WJ.

AMIA Annu Symp Proc. 2006:754-8.

7.

Similarity searches in genome-wide numerical data sets.

Glazko G, Coleman M, Mushegian A.

Biol Direct. 2006 May 30;1:13.

8.

Transcriptional regulation of protein complexes in yeast.

Simonis N, van Helden J, Cohen GN, Wodak SJ.

Genome Biol. 2004;5(5):R33. Epub 2004 Apr 30.

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