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Items: 1 to 20 of 40

1.

A RuBisCO-mediated carbon metabolic pathway in methanogenic archaea.

Kono T, Mehrotra S, Endo C, Kizu N, Matusda M, Kimura H, Mizohata E, Inoue T, Hasunuma T, Yokota A, Matsumura H, Ashida H.

Nat Commun. 2017 Jan 13;8:14007. doi: 10.1038/ncomms14007.

2.

Metabolic Regulation as a Consequence of Anaerobic 5-Methylthioadenosine Recycling in Rhodospirillum rubrum.

North JA, Sriram J, Chourey K, Ecker CD, Sharma R, Wildenthal JA, Hettich RL, Tabita FR.

MBio. 2016 Jul 12;7(4). pii: e00855-16. doi: 10.1128/mBio.00855-16.

3.

Breaking the rules of Rubisco catalysis.

Hanson DT.

J Exp Bot. 2016 May;67(11):3180-2. doi: 10.1093/jxb/erw197. No abstract available.

5.

A "footprint" of plant carbon fixation cycle functions during the development of a heterotrophic fungus.

Lyu X, Shen C, Xie J, Fu Y, Jiang D, Hu Z, Tang L, Tang L, Ding F, Li K, Wu S, Hu Y, Luo L, Li Y, Wang Q, Li G, Cheng J.

Sci Rep. 2015 Aug 11;5:12952. doi: 10.1038/srep12952.

6.

Integration of untargeted metabolomics with transcriptomics reveals active metabolic pathways.

Cho K, Evans BS, Wood BM, Kumar R, Erb TJ, Warlick BP, Gerlt JA, Sweedler JV.

Metabolomics. 2014 Sep 3;2014(August). pii: http://download.springer.com/static/pdf/273/art%253A10.1007%252Fs11306-014-0713-3.pdf?auth66=1424360271_7ef1df6c4c21b2596c3268954d4a7996&ext=.pdf.

7.

A previously uncharacterized, nonphotosynthetic member of the Chromatiaceae is the primary CO2-fixing constituent in a self-regenerating biocathode.

Wang Z, Leary DH, Malanoski AP, Li RW, Hervey WJ 4th, Eddie BJ, Tender GS, Yanosky SG, Vora GJ, Tender LM, Lin B, Strycharz-Glaven SM.

Appl Environ Microbiol. 2015 Jan;81(2):699-712. doi: 10.1128/AEM.02947-14. Epub 2014 Nov 14.

8.

Structural and biochemical basis for the inhibition of cell death by APIP, a methionine salvage enzyme.

Kang W, Hong SH, Lee HM, Kim NY, Lim YC, Le le TM, Lim B, Kim HC, Kim TY, Ashida H, Yokota A, Hah SS, Chun KH, Jung YK, Yang JK.

Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):E54-61. doi: 10.1073/pnas.1308768111. Epub 2013 Dec 23.

9.

Application of representational difference analysis to identify genomic differences between Bradyrhizobium elkanii and B. Japonicum species.

Soares RA, Passaglia LM.

Braz J Microbiol. 2010 Oct;41(4):1142-51. doi: 10.1590/S1517-838220100004000036. Epub 2010 Dec 1.

10.

MtnBD is a multifunctional fusion enzyme in the methionine salvage pathway of Tetrahymena thermophila.

Nakano T, Ohki I, Yokota A, Ashida H.

PLoS One. 2013 Jul 1;8(7):e67385. doi: 10.1371/journal.pone.0067385. Print 2013.

11.

Mechanistic diversity in the RuBisCO superfamily: RuBisCO from Rhodospirillum rubrum is not promiscuous for reactions catalyzed by RuBisCO-like proteins.

Warlick BP, Imker HJ, Sriram J, Tabita FR, Gerlt JA.

Biochemistry. 2012 Nov 27;51(47):9470-9. doi: 10.1021/bi301311t. Epub 2012 Nov 14.

12.

Enzymatic characterization of AMP phosphorylase and ribose-1,5-bisphosphate isomerase functioning in an archaeal AMP metabolic pathway.

Aono R, Sato T, Yano A, Yoshida S, Nishitani Y, Miki K, Imanaka T, Atomi H.

J Bacteriol. 2012 Dec;194(24):6847-55. doi: 10.1128/JB.01335-12. Epub 2012 Oct 12.

13.

A RubisCO-like protein links SAM metabolism with isoprenoid biosynthesis.

Erb TJ, Evans BS, Cho K, Warlick BP, Sriram J, Wood BM, Imker HJ, Sweedler JV, Tabita FR, Gerlt JA.

Nat Chem Biol. 2012 Nov;8(11):926-32. doi: 10.1038/nchembio.1087. Epub 2012 Oct 7.

14.

1-methylthio-D-xylulose 5-phosphate methylsulfurylase: a novel route to 1-deoxy-D-xylulose 5-phosphate in Rhodospirillum rubrum.

Warlick BP, Evans BS, Erb TJ, Ramagopal UA, Sriram J, Imker HJ, Sauder JM, Bonanno JB, Burley SK, Tabita FR, Almo SC, Sweedler JS, Gerlt JA.

Biochemistry. 2012 Oct 23;51(42):8324-6. doi: 10.1021/bi301215g. Epub 2012 Oct 8.

15.

Comparative molecular analysis of chemolithoautotrophic bacterial diversity and community structure from coastal saline soils, Gujarat, India.

Yousuf B, Sanadhya P, Keshri J, Jha B.

BMC Microbiol. 2012 Jul 26;12:150. doi: 10.1186/1471-2180-12-150.

16.

Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1.

Nakamura A, Fujihashi M, Aono R, Sato T, Nishiba Y, Yoshida S, Yano A, Atomi H, Imanaka T, Miki K.

J Biol Chem. 2012 Jun 15;287(25):20784-96. doi: 10.1074/jbc.M112.349423. Epub 2012 Apr 17.

17.

Phloem-specific expression of Yang cycle genes and identification of novel Yang cycle enzymes in Plantago and Arabidopsis.

Pommerrenig B, Feussner K, Zierer W, Rabinovych V, Klebl F, Feussner I, Sauer N.

Plant Cell. 2011 May;23(5):1904-19. doi: 10.1105/tpc.110.079657. Epub 2011 May 3.

18.

Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile.

Nishitani Y, Yoshida S, Fujihashi M, Kitagawa K, Doi T, Atomi H, Imanaka T, Miki K.

J Biol Chem. 2010 Dec 10;285(50):39339-47. doi: 10.1074/jbc.M110.147587. Epub 2010 Oct 6.

19.

MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies.

Stark M, Berger SA, Stamatakis A, von Mering C.

BMC Genomics. 2010 Aug 5;11:461. doi: 10.1186/1471-2164-11-461.

20.

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria.

Lücker S, Wagner M, Maixner F, Pelletier E, Koch H, Vacherie B, Rattei T, Damsté JS, Spieck E, Le Paslier D, Daims H.

Proc Natl Acad Sci U S A. 2010 Jul 27;107(30):13479-84. doi: 10.1073/pnas.1003860107. Epub 2010 Jul 12.

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