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Insertion of Retrotransposons at Chromosome Ends: Adaptive Response to Chromosome Maintenance.

Servant G, Deininger PL.

Front Genet. 2016 Jan 5;6:358. doi: 10.3389/fgene.2015.00358. Review.


Formation of Extrachromosomal Circular DNA from Long Terminal Repeats of Retrotransposons in Saccharomyces cerevisiae.

Møller HD, Larsen CE, Parsons L, Hansen AJ, Regenberg B, Mourier T.

G3 (Bethesda). 2015 Dec 17;6(2):453-62. doi: 10.1534/g3.115.025858.


Ribosomal protein and biogenesis factors affect multiple steps during movement of the Saccharomyces cerevisiae Ty1 retrotransposon.

Suresh S, Ahn HW, Joshi K, Dakshinamurthy A, Kananganat A, Garfinkel DJ, Farabaugh PJ.

Mob DNA. 2015 Dec 8;6:22. doi: 10.1186/s13100-015-0053-5. Erratum in: Mob DNA. 2016;7:5.


The RNAPII-CTD Maintains Genome Integrity through Inhibition of Retrotransposon Gene Expression and Transposition.

Aristizabal MJ, Negri GL, Kobor MS.

PLoS Genet. 2015 Oct 23;11(10):e1005608. doi: 10.1371/journal.pgen.1005608.


Meiotic recombination initiation in and around retrotransposable elements in Saccharomyces cerevisiae.

Sasaki M, Tischfield SE, van Overbeek M, Keeney S.

PLoS Genet. 2013 Aug;9(8):e1003732. doi: 10.1371/journal.pgen.1003732.


Evolutionary genomics of transposable elements in Saccharomyces cerevisiae.

Carr M, Bensasson D, Bergman CM.

PLoS One. 2012;7(11):e50978. doi: 10.1371/journal.pone.0050978.


Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress.

Servant G, Pinson B, Tchalikian-Cosson A, Coulpier F, Lemoine S, Pennetier C, Bridier-Nahmias A, Todeschini AL, Fayol H, Daignan-Fornier B, Lesage P.

Nucleic Acids Res. 2012 Jul;40(12):5271-82. doi: 10.1093/nar/gks166.


LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons.

Xu Z, Wang H.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W265-8.


SplitTester: software to identify domains responsible for functional divergence in protein family.

Gao X, Vander Velden KA, Voytas DF, Gu X.

BMC Bioinformatics. 2005 Jun 1;6:137.


Integration by design.

Sandmeyer S.

Proc Natl Acad Sci U S A. 2003 May 13;100(10):5586-8. Review. No abstract available.


Genomic evolution of the long terminal repeat retrotransposons in hemiascomycetous yeasts.

Neuvéglise C, Feldmann H, Bon E, Gaillardin C, Casaregola S.

Genome Res. 2002 Jun;12(6):930-43.


A CBF5 mutation that disrupts nucleolar localization of early tRNA biosynthesis in yeast also suppresses tRNA gene-mediated transcriptional silencing.

Kendall A, Hull MW, Bertrand E, Good PD, Singer RH, Engelke DR.

Proc Natl Acad Sci U S A. 2000 Nov 21;97(24):13108-13.


Genomic demography: a life-history analysis of transposable element evolution.

Promislow DE, Jordan IK, McDonald JF.

Proc Biol Sci. 1999 Aug 7;266(1428):1555-60.


Tempo and mode of Ty element evolution in Saccharomyces cerevisiae.

Jordan IK, McDonald JF.

Genetics. 1999 Apr;151(4):1341-51.


Pheromone-regulated genes required for yeast mating differentiation.

Erdman S, Lin L, Malczynski M, Snyder M.

J Cell Biol. 1998 Feb 9;140(3):461-83.


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