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Pathway-Consensus Approach to Metabolic Network Reconstruction for Pseudomonas putida KT2440 by Systematic Comparison of Published Models.

Yuan Q, Huang T, Li P, Hao T, Li F, Ma H, Wang Z, Zhao X, Chen T, Goryanin I.

PLoS One. 2017 Jan 13;12(1):e0169437. doi: 10.1371/journal.pone.0169437. eCollection 2017.


Metabolic Engineering of Pseudomonas putida KT2440 for the Production of para-Hydroxy Benzoic Acid.

Yu S, Plan MR, Winter G, Krömer JO.

Front Bioeng Biotechnol. 2016 Nov 28;4:90. eCollection 2016.


Properties of alternative microbial hosts used in synthetic biology: towards the design of a modular chassis.

Kim J, Salvador M, Saunders E, González J, Avignone-Rossa C, Jiménez JI.

Essays Biochem. 2016 Nov 30;60(4):303-313. Review.


Engineering Pseudomonas putida KT2440 for simultaneous degradation of carbofuran and chlorpyrifos.

Gong T, Liu R, Che Y, Xu X, Zhao F, Yu H, Song C, Liu Y, Yang C.

Microb Biotechnol. 2016 Nov;9(6):792-800. doi: 10.1111/1751-7915.12381. Epub 2016 Jul 15.


Permanent draft genome sequence of sulfoquinovose-degrading Pseudomonas putida strain SQ1.

Felux AK, Franchini P, Schleheck D.

Stand Genomic Sci. 2015 Jul 22;10:42. doi: 10.1186/s40793-015-0033-x. eCollection 2015.


A functional 4-hydroxybenzoate degradation pathway in the phytopathogen Xanthomonas campestris is required for full pathogenicity.

Wang JY, Zhou L, Chen B, Sun S, Zhang W, Li M, Tang H, Jiang BL, Tang JL, He YW.

Sci Rep. 2015 Dec 17;5:18456. doi: 10.1038/srep18456.


A novel biocatalyst for efficient production of 2-oxo-carboxylates using glycerol as the cost-effective carbon source.

Wang Y, Zhang Y, Jiang T, Meng J, Sheng B, Yang C, Gao C, Xu P, Ma C.

Biotechnol Biofuels. 2015 Nov 25;8:186. doi: 10.1186/s13068-015-0368-y. eCollection 2015.


Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment.

Timm CM, Campbell AG, Utturkar SM, Jun SR, Parales RE, Tan WA, Robeson MS, Lu TY, Jawdy S, Brown SD, Ussery DW, Schadt CW, Tuskan GA, Doktycz MJ, Weston DJ, Pelletier DA.

Front Microbiol. 2015 Oct 14;6:1118. doi: 10.3389/fmicb.2015.01118. eCollection 2015.


Hierarchy of Carbon Source Utilization in Soil Bacteria: Hegemonic Preference for Benzoate in Complex Aromatic Compound Mixtures Degraded by Cupriavidus pinatubonensis Strain JMP134.

Pérez-Pantoja D, Leiva-Novoa P, Donoso RA, Little C, Godoy M, Pieper DH, González B.

Appl Environ Microbiol. 2015 Jun 15;81(12):3914-24. doi: 10.1128/AEM.04207-14. Epub 2015 Mar 20.


Genome features of Pseudomonas putida LS46, a novel polyhydroxyalkanoate producer and its comparison with other P. putida strains.

Sharma PK, Fu J, Zhang X, Fristensky B, Sparling R, Levin DB.

AMB Express. 2014 May 22;4:37. doi: 10.1186/s13568-014-0037-8. eCollection 2014.


Lignin valorization through integrated biological funneling and chemical catalysis.

Linger JG, Vardon DR, Guarnieri MT, Karp EM, Hunsinger GB, Franden MA, Johnson CW, Chupka G, Strathmann TJ, Pienkos PT, Beckham GT.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):12013-8. doi: 10.1073/pnas.1410657111. Epub 2014 Aug 4.


The functional structure of central carbon metabolism in Pseudomonas putida KT2440.

Sudarsan S, Dethlefsen S, Blank LM, Siemann-Herzberg M, Schmid A.

Appl Environ Microbiol. 2014 Sep;80(17):5292-303. doi: 10.1128/AEM.01643-14. Epub 2014 Jun 20.


Integration of bioinformatics to biodegradation.

Arora PK, Bae H.

Biol Proced Online. 2014 Apr 27;16:8. doi: 10.1186/1480-9222-16-8. eCollection 2014. Review.


Modeling the differences in biochemical capabilities of pseudomonas species by flux balance analysis: how good are genome-scale metabolic networks at predicting the differences?

Babaei P, Ghasemi-Kahrizsangi T, Marashi SA.

ScientificWorldJournal. 2014 Feb 24;2014:416289. doi: 10.1155/2014/416289. eCollection 2014.


Fermentation products of solvent tolerant marine bacterium Moraxella spp. MB1 and its biotechnological applications in salicylic acid bioconversion.

Wahidullah S, Naik DN, Devi P.

PLoS One. 2013 Dec 31;8(12):e83647. doi: 10.1371/journal.pone.0083647. eCollection 2013.


Systematic unraveling of the unsolved pathway of nicotine degradation in Pseudomonas.

Tang H, Wang L, Wang W, Yu H, Zhang K, Yao Y, Xu P.

PLoS Genet. 2013 Oct;9(10):e1003923. doi: 10.1371/journal.pgen.1003923. Epub 2013 Oct 24.


Function of a glutamine synthetase-like protein in bacterial aniline oxidation via γ-glutamylanilide.

Takeo M, Ohara A, Sakae S, Okamoto Y, Kitamura C, Kato D, Negoro S.

J Bacteriol. 2013 Oct;195(19):4406-14. doi: 10.1128/JB.00397-13. Epub 2013 Jul 26.


Metabolic potential of the organic-solvent tolerant Pseudomonas putida DOT-T1E deduced from its annotated genome.

Udaondo Z, Molina L, Daniels C, Gómez MJ, Molina-Henares MA, Matilla MA, Roca A, Fernández M, Duque E, Segura A, Ramos JL.

Microb Biotechnol. 2013 Sep;6(5):598-611. doi: 10.1111/1751-7915.12061. Epub 2013 Jul 1.


Chemoecological screening reveals high bioactivity in diverse culturable Portuguese marine cyanobacteria.

Leão PN, Ramos V, Gonçalves PB, Viana F, Lage OM, Gerwick WH, Vasconcelos VM.

Mar Drugs. 2013 Apr 22;11(4):1316-35. doi: 10.3390/md11041316.

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