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Items: 1 to 20 of 49

1.

Epitope analysis of anti-myeloperoxidase antibodies in patients with ANCA-associated vasculitis.

Gou SJ, Xu PC, Chen M, Zhao MH.

PLoS One. 2013;8(4):e60530. doi: 10.1371/journal.pone.0060530. Epub 2013 Apr 5.

2.

PubChem3D: conformer ensemble accuracy.

Kim S, Bolton EE, Bryant SH.

J Cheminform. 2013 Jan 7;5(1):1. doi: 10.1186/1758-2946-5-1.

3.

Cytoplasmic amino acids within the membrane interface region influence connexin oligomerization.

Smith TD, Mohankumar A, Minogue PJ, Beyer EC, Berthoud VM, Koval M.

J Membr Biol. 2012 Jun;245(5-6):221-30. doi: 10.1007/s00232-012-9443-5. Epub 2012 Jun 22.

4.

Homology inference of protein-protein interactions via conserved binding sites.

Tyagi M, Thangudu RR, Zhang D, Bryant SH, Madej T, Panchenko AR.

PLoS One. 2012;7(1):e28896. doi: 10.1371/journal.pone.0028896. Epub 2012 Jan 31.

5.

Modulating protein-protein interactions with small molecules: the importance of binding hotspots.

Thangudu RR, Bryant SH, Panchenko AR, Madej T.

J Mol Biol. 2012 Jan 13;415(2):443-53. doi: 10.1016/j.jmb.2011.12.026. Epub 2011 Dec 16.

6.

Specificity of interaction between clostridium perfringens enterotoxin and claudin-family tight junction proteins.

Mitchell LA, Koval M.

Toxins (Basel). 2010 Jul;2(7):1595-611. doi: 10.3390/toxins2071595. Epub 2010 Jun 24. Review.

7.

A gain-of-function germline mutation in Drosophila ras1 affects apoptosis and cell fate during development.

Gafuik C, Steller H.

PLoS One. 2011;6(8):e23535. doi: 10.1371/journal.pone.0023535. Epub 2011 Aug 12.

8.

PubChem3D: Conformer generation.

Bolton EE, Kim S, Bryant SH.

J Cheminform. 2011 Jan 27;3(1):4. doi: 10.1186/1758-2946-3-4.

9.

FcRn overexpression in mice results in potent humoral response against weakly immunogenic antigen.

VĂ©gh A, Cervenak J, Jankovics I, Kacskovics I.

MAbs. 2011 Mar-Apr;3(2):173-80. Epub 2011 Mar 1.

10.

Novel roles of the picornaviral 3D polymerase in viral pathogenesis.

Kerkvliet J, Edukulla R, Rodriguez M.

Adv Virol. 2010 Jan 1;2010:368068.

11.

Knowledge-based annotation of small molecule binding sites in proteins.

Thangudu RR, Tyagi M, Shoemaker BA, Bryant SH, Panchenko AR, Madej T.

BMC Bioinformatics. 2010 Jul 1;11:365. doi: 10.1186/1471-2105-11-365.

12.

Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput "omics" Data.

Chen C, McGarvey PB, Huang H, Wu CH.

Adv Bioinformatics. 2010:423589. doi: 10.1155/2010/423589. Epub 2010 Mar 29.

13.

Cystatin superfamily.

Ochieng J, Chaudhuri G.

J Health Care Poor Underserved. 2010 Feb;21(1 Suppl):51-70. doi: 10.1353/hpu.0.0257. Review.

14.

Granzyme B cleavage of autoantigens in autoimmunity.

Darrah E, Rosen A.

Cell Death Differ. 2010 Apr;17(4):624-32. doi: 10.1038/cdd.2009.197. Epub 2010 Jan 15. Review.

15.

Structure, affinity, and availability of estrogen receptor complexes in the cellular environment.

Kofoed EM, Guerbadot M, Schaufele F.

J Biol Chem. 2010 Jan 22;285(4):2428-37. doi: 10.1074/jbc.M109.045203. Epub 2009 Nov 19.

16.

Inferred Biomolecular Interaction Server--a web server to analyze and predict protein interacting partners and binding sites.

Shoemaker BA, Zhang D, Thangudu RR, Tyagi M, Fong JH, Marchler-Bauer A, Bryant SH, Madej T, Panchenko AR.

Nucleic Acids Res. 2010 Jan;38(Database issue):D518-24. doi: 10.1093/nar/gkp842. Epub 2009 Oct 20.

17.

Exploring functional roles of multibinding protein interfaces.

Tyagi M, Shoemaker BA, Bryant SH, Panchenko AR.

Protein Sci. 2009 Aug;18(8):1674-83. doi: 10.1002/pro.181.

18.

Improving protein structure similarity searches using domain boundaries based on conserved sequence information.

Thompson KE, Wang Y, Madej T, Bryant SH.

BMC Struct Biol. 2009 May 19;9:33. doi: 10.1186/1472-6807-9-33.

19.

OPUS-Dom: applying the folding-based method VECFOLD to determine protein domain boundaries.

Wu Y, Dousis AD, Chen M, Li J, Ma J.

J Mol Biol. 2009 Jan 30;385(4):1314-29. doi: 10.1016/j.jmb.2008.10.093. Epub 2008 Nov 10.

20.

Characterization of domain-peptide interaction interface: a generic structure-based model to decipher the binding specificity of SH3 domains.

Hou T, Xu Z, Zhang W, McLaughlin WA, Case DA, Xu Y, Wang W.

Mol Cell Proteomics. 2009 Apr;8(4):639-49. doi: 10.1074/mcp.M800450-MCP200. Epub 2008 Nov 20.

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