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Effects of Cold Ischemia on Gene Expression: A Review and Commentary.

Grizzle WE, Otali D, Sexton KC, Atherton DS.

Biopreserv Biobank. 2016 Dec;14(6):548-558. Epub 2016 Aug 23. Review.


Tumour sampling method can significantly influence gene expression profiles derived from neoadjuvant window studies.

Pearce DA, Arthur LM, Turnbull AK, Renshaw L, Sabine VS, Thomas JS, Bartlett JM, Dixon JM, Sims AH.

Sci Rep. 2016 Jul 7;6:29434. doi: 10.1038/srep29434.


Gene expression in normal-appearing tissue adjacent to prostate cancers are predictive of clinical outcome: evidence for a biologically meaningful field effect.

Magi-Galluzzi C, Maddala T, Falzarano SM, Cherbavaz DB, Zhang N, Knezevic D, Febbo PG, Lee M, Lawrence HJ, Klein EA.

Oncotarget. 2016 Jun 7;7(23):33855-65. doi: 10.18632/oncotarget.8944.


Nanoproteomic analysis of ischemia-dependent changes in signaling protein phosphorylation in colorectal normal and cancer tissue.

Unger FT, Lange N, Krüger J, Compton C, Moore H, Agrawal L, Juhl H, David KA.

J Transl Med. 2016 Jan 8;14:6. doi: 10.1186/s12967-015-0752-1.


Impact of devascularization and tissue procurement on cell number and RNA integrity in prostatectomy tissue.

Payne Ondracek R, Cheng J, Gangavarapu KJ, Azabdaftari G, Woltz J, Brese E, Omilian A, Bshara W, Huss WJ, Mohler JL, Marshall JR.

Prostate. 2015 Dec;75(16):1910-5. doi: 10.1002/pros.23087. Epub 2015 Sep 9.


Widespread intron retention diversifies most cancer transcriptomes.

Dvinge H, Bradley RK.

Genome Med. 2015 May 15;7(1):45. doi: 10.1186/s13073-015-0168-9. eCollection 2015.


World Endometriosis Research Foundation Endometriosis Phenome and Biobanking Harmonisation Project: IV. Tissue collection, processing, and storage in endometriosis research.

Fassbender A, Rahmioglu N, Vitonis AF, Viganò P, Giudice LC, D'Hooghe TM, Hummelshoj L, Adamson GD, Becker CM, Missmer SA, Zondervan KT; WERF EPHect Working Group.

Fertil Steril. 2014 Nov;102(5):1244-53. doi: 10.1016/j.fertnstert.2014.07.1209. Epub 2014 Sep 22. Review.


Renal tissue thawed for 30 minutes is still suitable for gene expression analysis.

Ma Y, Kang XN, Ding WB, Yang HZ, Wang Y, Zhang J, Huang YR, Dai HL.

PLoS One. 2014 Mar 31;9(3):e93175. doi: 10.1371/journal.pone.0093175. eCollection 2014.


Role of surgeons in determining outcome of histopathology specimens.

Atanda AT, Raphael S.

Niger J Surg. 2013 Jul;19(2):68-72. doi: 10.4103/1117-6806.119242.


Impact of delay to cryopreservation on RNA integrity and genome-wide expression profiles in resected tumor samples.

Caboux E, Paciencia M, Durand G, Robinot N, Wozniak MB, Galateau-Salle F, Byrnes G, Hainaut P, Le Calvez-Kelm F.

PLoS One. 2013 Nov 20;8(11):e79826. doi: 10.1371/journal.pone.0079826. eCollection 2013.


Biobanking of derivatives from radical retropubic and robot-assisted laparoscopic prostatectomy tissues as part of the prostate cancer biorepository network.

Darshan M, Zheng Q, Fedor HL, Wyhs N, Yegnasubramanian S, Lee P, Melamed J, Netto GJ, Trock BJ, De Marzo AM, Sfanos KS.

Prostate. 2014 Jan;74(1):61-9. doi: 10.1002/pros.22730. Epub 2013 Sep 21.


Clinical implementation of RNA signatures for pharmacogenomic decision-making.

Tang W, Hu Z, Muallem H, Gulley ML.

Pharmgenomics Pers Med. 2011;4:95-107. doi: 10.2147/PGPM.S14888. Epub 2011 Sep 8.


Impact of ischemia and procurement conditions on gene expression in renal cell carcinoma.

Liu NW, Sanford T, Srinivasan R, Liu JL, Khurana K, Aprelikova O, Valero V, Bechert C, Worrell R, Pinto PA, Yang Y, Merino M, Linehan WM, Bratslavsky G.

Clin Cancer Res. 2013 Jan 1;19(1):42-9. doi: 10.1158/1078-0432.CCR-12-2606. Epub 2012 Nov 7.


Effect of surgical procedures on prostate tumor gene expression profiles.

Li J, Zhang ZH, Yin CJ, Pavlovich C, Luo J, Getzenberg R, Zhang W.

Asian J Androl. 2012 Sep;14(5):708-14. doi: 10.1038/aja.2012.54. Epub 2012 Aug 6.


Shared gene expression alterations in prostate cancer and histologically benign prostate from patients with prostate cancer.

Kosari F, Cheville JC, Ida CM, Karnes RJ, Leontovich AA, Sebo TJ, Erdogan S, Rodriguez E, Murphy SJ, Vasmatzis G.

Am J Pathol. 2012 Jul;181(1):34-42. doi: 10.1016/j.ajpath.2012.03.043. Epub 2012 May 26.


Issues in collecting, processing and storing human tissues and associated information to support biomedical research.

Grizzle WE, Bell WC, Sexton KC.

Cancer Biomark. 2010;9(1-6):531-49. doi: 10.3233/CBM-2011-0183.


Biomarkers in the management and treatment of men with metastatic castration-resistant prostate cancer.

Armstrong AJ, Eisenberger MA, Halabi S, Oudard S, Nanus DM, Petrylak DP, Sartor AO, Scher HI.

Eur Urol. 2012 Mar;61(3):549-59. doi: 10.1016/j.eururo.2011.11.009. Epub 2011 Nov 12. Review.


Effects of tissue handling on RNA integrity and microarray measurements from resected breast cancers.

Hatzis C, Sun H, Yao H, Hubbard RE, Meric-Bernstam F, Babiera GV, Wu Y, Pusztai L, Symmans WF.

J Natl Cancer Inst. 2011 Dec 21;103(24):1871-83. doi: 10.1093/jnci/djr438. Epub 2011 Oct 27.


Ischemia caused by time to freezing induces systematic microRNA and mRNA responses in cancer tissue.

Borgan E, Navon R, Vollan HK, Schlichting E, Sauer T, Yakhini Z, Lingjærde OC, Sørlie T, Børresen-Dale AL.

Mol Oncol. 2011 Dec;5(6):564-76. doi: 10.1016/j.molonc.2011.08.004. Epub 2011 Aug 29.


Gene Expression Profiles from Peripheral Blood Mononuclear Cells Are Sensitive to Short Processing Delays.

Barnes MG, Grom AA, Griffin TA, Colbert RA, Thompson SD.

Biopreserv Biobank. 2010 Sep 29;8(3):153-162.

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