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Items: 1 to 20 of 28

1.

Predicting Subcellular Localization of Apoptosis Proteins Combining GO Features of Homologous Proteins and Distance Weighted KNN Classifier.

Wang X, Li H, Zhang Q, Wang R.

Biomed Res Int. 2016;2016:1793272. doi: 10.1155/2016/1793272. Epub 2016 Apr 24.

2.

Sparse regressions for predicting and interpreting subcellular localization of multi-label proteins.

Wan S, Mak MW, Kung SY.

BMC Bioinformatics. 2016 Feb 24;17:97. doi: 10.1186/s12859-016-0940-x.

3.

A novel approach for protein subcellular location prediction using amino acid exposure.

Mer AS, Andrade-Navarro MA.

BMC Bioinformatics. 2013 Nov 28;14:342. doi: 10.1186/1471-2105-14-342.

4.

Proteome-wide discovery of mislocated proteins in cancer.

Lee K, Byun K, Hong W, Chuang HY, Pack CG, Bayarsaikhan E, Paek SH, Kim H, Shin HY, Ideker T, Lee B.

Genome Res. 2013 Aug;23(8):1283-94. doi: 10.1101/gr.155499.113. Epub 2013 May 14.

5.

mGOASVM: Multi-label protein subcellular localization based on gene ontology and support vector machines.

Wan S, Mak MW, Kung SY.

BMC Bioinformatics. 2012 Nov 6;13:290. doi: 10.1186/1471-2105-13-290.

6.

Fast subcellular localization by cascaded fusion of signal-based and homology-based methods.

Mak MW, Wang W, Kung SY.

Proteome Sci. 2011 Oct 14;9 Suppl 1:S8. doi: 10.1186/1477-5956-9-S1-S8.

7.

Combining machine learning and homology-based approaches to accurately predict subcellular localization in Arabidopsis.

Kaundal R, Saini R, Zhao PX.

Plant Physiol. 2010 Sep;154(1):36-54. doi: 10.1104/pp.110.156851. Epub 2010 Jul 20.

8.

Amino acid classification based spectrum kernel fusion for protein subnuclear localization.

Mei S, Fei W.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S17. doi: 10.1186/1471-2105-11-S1-S17.

9.

Protein subcellular localization prediction of eukaryotes using a knowledge-based approach.

Lin HN, Chen CT, Sung TY, Ho SY, Hsu WL.

BMC Bioinformatics. 2009 Dec 3;10 Suppl 15:S8. doi: 10.1186/1471-2105-10-S15-S8.

10.

d-Omix: a mixer of generic protein domain analysis tools.

Wichadakul D, Numnark S, Ingsriswang S.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W417-21. doi: 10.1093/nar/gkp329. Epub 2009 May 21.

11.

Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species.

Lee K, Chuang HY, Beyer A, Sung MK, Huh WK, Lee B, Ideker T.

Nucleic Acids Res. 2008 Nov;36(20):e136. doi: 10.1093/nar/gkn619. Epub 2008 Oct 4.

12.

Identification and correction of abnormal, incomplete and mispredicted proteins in public databases.

Nagy A, Hegyi H, Farkas K, Tordai H, Kozma E, Bányai L, Patthy L.

BMC Bioinformatics. 2008 Aug 27;9:353. doi: 10.1186/1471-2105-9-353.

13.

Computational prediction of human proteins that can be secreted into the bloodstream.

Cui J, Liu Q, Puett D, Xu Y.

Bioinformatics. 2008 Oct 15;24(20):2370-5. doi: 10.1093/bioinformatics/btn418. Epub 2008 Aug 12.

14.

DBMLoc: a Database of proteins with multiple subcellular localizations.

Zhang S, Xia X, Shen J, Zhou Y, Sun Z.

BMC Bioinformatics. 2008 Feb 28;9:127. doi: 10.1186/1471-2105-9-127.

15.

DBD--taxonomically broad transcription factor predictions: new content and functionality.

Wilson D, Charoensawan V, Kummerfeld SK, Teichmann SA.

Nucleic Acids Res. 2008 Jan;36(Database issue):D88-92. Epub 2007 Dec 11.

16.

Protein subcellular localization prediction based on compartment-specific features and structure conservation.

Su EC, Chiu HS, Lo A, Hwang JK, Sung TY, Hsu WL.

BMC Bioinformatics. 2007 Sep 8;8:330.

17.

A domain-based approach to predict protein-protein interactions.

Singhal M, Resat H.

BMC Bioinformatics. 2007 Jun 13;8:199.

18.

Predicting the subcellular localization of human proteins using machine learning and exploratory data analysis.

Acquaah-Mensah GK, Leach SM, Guda C.

Genomics Proteomics Bioinformatics. 2006 May;4(2):120-33.

19.

Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information.

Lee S, Lee B, Jang I, Kim S, Bhak J.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W99-103.

20.

pTARGET: a web server for predicting protein subcellular localization.

Guda C.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W210-3.

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