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Items: 1 to 20 of 46

1.

Coordinate action of distinct sequence elements localizes checkpoint kinase Hsl1 to the septin collar at the bud neck in Saccharomyces cerevisiae.

Finnigan GC, Sterling SM, Duvalyan A, Liao EN, Sargsyan A, Garcia G 3rd, Nogales E, Thorner J.

Mol Biol Cell. 2016 Jul 15;27(14):2213-33. doi: 10.1091/mbc.E16-03-0177. Epub 2016 May 18.

2.

p62/Sequestosome-1, Autophagy-related Gene 8, and Autophagy in Drosophila Are Regulated by Nuclear Factor Erythroid 2-related Factor 2 (NRF2), Independent of Transcription Factor TFEB.

Jain A, Rusten TE, Katheder N, Elvenes J, Bruun JA, Sj√łttem E, Lamark T, Johansen T.

J Biol Chem. 2015 Jun 12;290(24):14945-62. doi: 10.1074/jbc.M115.656116. Epub 2015 Apr 30.

3.

The SNF1 Kinase Ubiquitin-associated Domain Restrains Its Activation, Activity, and the Yeast Life Span.

Jiao R, Postnikoff S, Harkness TA, Arnason TG.

J Biol Chem. 2015 Jun 19;290(25):15393-404. doi: 10.1074/jbc.M115.647032. Epub 2015 Apr 13.

4.

A ubiquitin shuttle DC-UbP/UBTD2 reconciles protein ubiquitination and deubiquitination via linking UbE1 and USP5 enzymes.

Song AX, Yang H, Gao YG, Zhou CJ, Zhang YH, Hu HY.

PLoS One. 2014 Sep 10;9(9):e107509. doi: 10.1371/journal.pone.0107509. eCollection 2014.

5.

The arabidopsis histone methyltransferase SUVR4 binds ubiquitin via a domain with a four-helix bundle structure.

Rahman MA, Kristiansen PE, Veiseth SV, Andersen JT, Yap KL, Zhou MM, Sandlie I, Thorstensen T, Aalen RB.

Biochemistry. 2014 Apr 8;53(13):2091-100. doi: 10.1021/bi401436h. Epub 2014 Mar 25.

6.

Genomic survey, gene expression analysis and structural modeling suggest diverse roles of DNA methyltransferases in legumes.

Garg R, Kumari R, Tiwari S, Goyal S.

PLoS One. 2014 Feb 25;9(2):e88947. doi: 10.1371/journal.pone.0088947. eCollection 2014.

7.

The development of a universal in silico predictor of protein-protein interactions.

Valente GT, Acencio ML, Martins C, Lemke N.

PLoS One. 2013 May 31;8(5):e65587. doi: 10.1371/journal.pone.0065587. Print 2013.

8.

The ubiquitin-associated (UBA) 1 domain of Schizosaccharomyces pombe Rhp23 is essential for the recognition of ubiquitin-proteasome system substrates both in vitro and in vivo.

Medina B, Paraskevopoulos K, Boehringer J, Sznajder A, Robertson M, Endicott J, Gordon C.

J Biol Chem. 2012 Dec 7;287(50):42344-51. doi: 10.1074/jbc.M112.419838. Epub 2012 Oct 4.

9.

Ubiquitin-associated (UBA) domain in human Fas associated factor 1 inhibits tumor formation by promoting Hsp70 degradation.

Lee JJ, Kim YM, Jeong J, Bae DS, Lee KJ.

PLoS One. 2012;7(8):e40361. doi: 10.1371/journal.pone.0040361. Epub 2012 Aug 2.

10.

The UBAP1 subunit of ESCRT-I interacts with ubiquitin via a SOUBA domain.

Agromayor M, Soler N, Caballe A, Kueck T, Freund SM, Allen MD, Bycroft M, Perisic O, Ye Y, McDonald B, Scheel H, Hofmann K, Neil SJ, Martin-Serrano J, Williams RL.

Structure. 2012 Mar 7;20(3):414-28. doi: 10.1016/j.str.2011.12.013.

11.

Domain analysis reveals that a deubiquitinating enzyme USP13 performs non-activating catalysis for Lys63-linked polyubiquitin.

Zhang YH, Zhou CJ, Zhou ZR, Song AX, Hu HY.

PLoS One. 2011;6(12):e29362. doi: 10.1371/journal.pone.0029362. Epub 2011 Dec 28.

12.

Structural analysis of the UBA domain of X-linked inhibitor of apoptosis protein reveals different surfaces for ubiquitin-binding and self-association.

Tse MK, Hui SK, Yang Y, Yin ST, Hu HY, Zou B, Wong BC, Sze KH.

PLoS One. 2011;6(12):e28511. doi: 10.1371/journal.pone.0028511. Epub 2011 Dec 15.

13.

Chfr and RNF8 synergistically regulate ATM activation.

Wu J, Chen Y, Lu LY, Wu Y, Paulsen MT, Ljungman M, Ferguson DO, Yu X.

Nat Struct Mol Biol. 2011 Jun 26;18(7):761-8. doi: 10.1038/nsmb.2078.

14.

C-terminal UBA domains protect ubiquitin receptors by preventing initiation of protein degradation.

Heinen C, Acs K, Hoogstraten D, Dantuma NP.

Nat Commun. 2011 Feb 8;2:191. doi: 10.1038/ncomms1179.

15.

The E2-25K ubiquitin-associated (UBA) domain aids in polyubiquitin chain synthesis and linkage specificity.

Wilson RC, Edmondson SP, Flatt JW, Helms K, Twigg PD.

Biochem Biophys Res Commun. 2011 Feb 25;405(4):662-6. doi: 10.1016/j.bbrc.2011.01.089. Epub 2011 Jan 31.

16.

HDAC6 and Ubp-M BUZ domains recognize specific C-terminal sequences of proteins.

Hard RL, Liu J, Shen J, Zhou P, Pei D.

Biochemistry. 2010 Dec 21;49(50):10737-46. doi: 10.1021/bi101014s. Epub 2010 Nov 29.

17.

The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana.

Henderson IR, Deleris A, Wong W, Zhong X, Chin HG, Horwitz GA, Kelly KA, Pradhan S, Jacobsen SE.

PLoS Genet. 2010 Oct 28;6(10):e1001182. doi: 10.1371/journal.pgen.1001182.

18.

Defining an Embedded Code for Protein Ubiquitination.

Jadhav T, Wooten MW.

J Proteomics Bioinform. 2009 Jul 24;2:316.

19.

NMR structure note: UBA domain of CIP75.

Kieken F, Spagnol G, Su V, Lau AF, Sorgen PL.

J Biomol NMR. 2010 Mar;46(3):245-50. doi: 10.1007/s10858-010-9397-9. Epub 2010 Feb 3. No abstract available.

20.

Avid interactions underlie the Lys63-linked polyubiquitin binding specificities observed for UBA domains.

Sims JJ, Haririnia A, Dickinson BC, Fushman D, Cohen RE.

Nat Struct Mol Biol. 2009 Aug;16(8):883-9. doi: 10.1038/nsmb.1637. Epub 2009 Jul 20.

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