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Items: 1 to 20 of 22

1.

Statistical analysis of structural determinants for protein-DNA-binding specificity.

Corona RI, Guo JT.

Proteins. 2016 Aug;84(8):1147-61. doi: 10.1002/prot.25061. Epub 2016 Jun 15.

2.

Endonuclease domain of non-LTR retrotransposons: loss-of-function mutants and modeling of the R2Bm endonuclease.

Govindaraju A, Cortez JD, Reveal B, Christensen SM.

Nucleic Acids Res. 2016 Apr 20;44(7):3276-87. Epub 2016 Mar 9.

3.

How quantum entanglement in DNA synchronizes double-strand breakage by type II restriction endonucleases.

Kurian P, Dunston G, Lindesay J.

J Theor Biol. 2016 Feb 21;391:102-12. doi: 10.1016/j.jtbi.2015.11.018. Epub 2015 Dec 10.

4.

Functional significance of protein assemblies predicted by the crystal structure of the restriction endonuclease BsaWI.

Tamulaitis G, Rutkauskas M, Zaremba M, Grazulis S, Tamulaitiene G, Siksnys V.

Nucleic Acids Res. 2015 Sep 18;43(16):8100-10. doi: 10.1093/nar/gkv768. Epub 2015 Aug 3.

5.

Type II restriction endonucleases--a historical perspective and more.

Pingoud A, Wilson GG, Wende W.

Nucleic Acids Res. 2014 Jul;42(12):7489-527. doi: 10.1093/nar/gku447. Epub 2014 May 30. Review. Erratum in: Nucleic Acids Res. 2016 Sep 19;44(16):8011.

6.

The crystal structure of D212 from sulfolobus spindle-shaped virus ragged hills reveals a new member of the PD-(D/E)XK nuclease superfamily.

Menon SK, Eilers BJ, Young MJ, Lawrence CM.

J Virol. 2010 Jun;84(12):5890-7. doi: 10.1128/JVI.01663-09. Epub 2010 Apr 7.

7.

An Mrr-family nuclease motif in the single polypeptide restriction-modification enzyme LlaGI.

Smith RM, Josephsen J, Szczelkun MD.

Nucleic Acids Res. 2009 Nov;37(21):7231-8. doi: 10.1093/nar/gkp795.

8.

Central base pair flipping and discrimination by PspGI.

Szczepanowski RH, Carpenter MA, Czapinska H, Zaremba M, Tamulaitis G, Siksnys V, Bhagwat AS, Bochtler M.

Nucleic Acids Res. 2008 Nov;36(19):6109-17. doi: 10.1093/nar/gkn622. Epub 2008 Oct 1.

9.

How PspGI, catalytic domain of EcoRII and Ecl18kI acquire specificities for different DNA targets.

Tamulaitis G, Zaremba M, Szczepanowski RH, Bochtler M, Siksnys V.

Nucleic Acids Res. 2008 Nov;36(19):6101-8. doi: 10.1093/nar/gkn621. Epub 2008 Sep 27.

10.

Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses.

Orlowski J, Bujnicki JM.

Nucleic Acids Res. 2008 Jun;36(11):3552-69. doi: 10.1093/nar/gkn175. Epub 2008 May 2.

11.

Nucleotide flipping by restriction enzymes analyzed by 2-aminopurine steady-state fluorescence.

Tamulaitis G, Zaremba M, Szczepanowski RH, Bochtler M, Siksnys V.

Nucleic Acids Res. 2007;35(14):4792-9. Epub 2007 Jul 7.

12.

Nucleotide flips determine the specificity of the Ecl18kI restriction endonuclease.

Bochtler M, Szczepanowski RH, Tamulaitis G, Grazulis S, Czapinska H, Manakova E, Siksnys V.

EMBO J. 2006 May 17;25(10):2219-29. Epub 2006 Apr 20.

15.
16.

A homology model of restriction endonuclease SfiI in complex with DNA.

Chmiel AA, Bujnicki JM, Skowronek KJ.

BMC Struct Biol. 2005 Jan 24;5:2.

17.
18.

One recognition sequence, seven restriction enzymes, five reaction mechanisms.

Gowers DM, Bellamy SR, Halford SE.

Nucleic Acids Res. 2004 Jun 29;32(11):3469-79. Print 2004.

19.

Diversity of type II restriction endonucleases that require two DNA recognition sites.

Mucke M, Kruger DH, Reuter M.

Nucleic Acids Res. 2003 Nov 1;31(21):6079-84.

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