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Items: 20

1.

Imaging of DNA and Protein-DNA Complexes with Atomic Force Microscopy.

Lyubchenko YL, Shlyakhtenko LS.

Crit Rev Eukaryot Gene Expr. 2016;26(1):63-96. doi: 10.1615/CritRevEukaryotGeneExpr.v26.i1.70. Review.

2.

Single molecular investigation of DNA looping and aggregation by restriction endonuclease BspMI.

Wang Y, Ran S, Yang G.

Sci Rep. 2014 Jul 31;4:5897. doi: 10.1038/srep05897.

3.

Type II restriction endonucleases--a historical perspective and more.

Pingoud A, Wilson GG, Wende W.

Nucleic Acids Res. 2014 Jul;42(12):7489-527. doi: 10.1093/nar/gku447. Epub 2014 May 30. Review. Erratum in: Nucleic Acids Res. 2016 Sep 19;44(16):8011.

4.

TstI, a Type II restriction-modification protein with DNA recognition, cleavage and methylation functions in a single polypeptide.

Smith RM, Pernstich C, Halford SE.

Nucleic Acids Res. 2014 May;42(9):5809-22. doi: 10.1093/nar/gku187. Epub 2014 Mar 14.

5.

Organization of the BcgI restriction-modification protein for the cleavage of eight phosphodiester bonds in DNA.

Smith RM, Marshall JJ, Jacklin AJ, Retter SE, Halford SE, Sobott F.

Nucleic Acids Res. 2013 Jan 7;41(1):391-404. doi: 10.1093/nar/gks1023. Epub 2012 Nov 11.

6.

Structure and cleavage activity of the tetrameric MspJI DNA modification-dependent restriction endonuclease.

Horton JR, Mabuchi MY, Cohen-Karni D, Zhang X, Griggs RM, Samaranayake M, Roberts RJ, Zheng Y, Cheng X.

Nucleic Acids Res. 2012 Oct;40(19):9763-73. doi: 10.1093/nar/gks719. Epub 2012 Jul 30.

7.

Concerted action at eight phosphodiester bonds by the BcgI restriction endonuclease.

Marshall JJ, Smith RM, Ganguly S, Halford SE.

Nucleic Acids Res. 2011 Sep 1;39(17):7630-40. doi: 10.1093/nar/gkr453. Epub 2011 Jun 7.

8.

A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI).

Khan F, Furuta Y, Kawai M, Kaminska KH, Ishikawa K, Bujnicki JM, Kobayashi I.

Nucleic Acids Res. 2010 May;38(9):3019-30. doi: 10.1093/nar/gkp1221. Epub 2010 Jan 13.

10.

A switch in the mechanism of communication between the two DNA-binding sites in the SfiI restriction endonuclease.

Bellamy SR, Milsom SE, Kovacheva YS, Sessions RB, Halford SE.

J Mol Biol. 2007 Nov 9;373(5):1169-83. Epub 2007 Aug 21.

11.

An EM view of the FokI synaptic complex by single particle analysis.

Vanamee ES, Berriman J, Aggarwal AK.

J Mol Biol. 2007 Jul 6;370(2):207-12. Epub 2007 May 3.

12.

Dynamics of synaptic SfiI-DNA complex: single-molecule fluorescence analysis.

Karymov MA, Krasnoslobodtsev AV, Lyubchenko YL.

Biophys J. 2007 May 1;92(9):3241-50. Epub 2007 Feb 2.

13.

Restriction endonucleases that bridge and excise two recognition sites from DNA.

Marshall JJ, Gowers DM, Halford SE.

J Mol Biol. 2007 Mar 23;367(2):419-31. Epub 2007 Jan 3.

14.

Protein assembly and DNA looping by the FokI restriction endonuclease.

Catto LE, Ganguly S, Milsom SE, Welsh AJ, Halford SE.

Nucleic Acids Res. 2006 Mar 23;34(6):1711-20. Print 2006.

15.

A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA.

Vanamee ES, Viadiu H, Kucera R, Dorner L, Picone S, Schildkraut I, Aggarwal AK.

EMBO J. 2005 Dec 7;24(23):4198-208. Epub 2005 Nov 24.

16.

DNA communications by Type III restriction endonucleases--confirmation of 1D translocation over 3D looping.

Peakman LJ, Szczelkun MD.

Nucleic Acids Res. 2004 Aug 9;32(14):4166-74. Print 2004.

17.

One recognition sequence, seven restriction enzymes, five reaction mechanisms.

Gowers DM, Bellamy SR, Halford SE.

Nucleic Acids Res. 2004 Jun 29;32(11):3469-79. Print 2004.

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Tailoring the activity of restriction endonuclease PleI by PNA-induced DNA looping.

Protozanova E, Demidov VV, Soldatenkov V, Chasovskikh S, Frank-Kamenetskii MD.

EMBO Rep. 2002 Oct;3(10):956-61. Epub 2002 Sep 13.

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