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Items: 1 to 20 of 48


Structural variants caused by Alu insertions are associated with risks for many human diseases.

Payer LM, Steranka JP, Yang WR, Kryatova M, Medabalimi S, Ardeljan D, Liu C, Boeke JD, Avramopoulos D, Burns KH.

Proc Natl Acad Sci U S A. 2017 May 16;114(20):E3984-E3992. doi: 10.1073/pnas.1704117114. Epub 2017 May 2.


Insertion and deletion polymorphisms of the ancient AluS family in the human genome.

Kryatova MS, Steranka JP, Burns KH, Payer LM.

Mob DNA. 2017 Apr 24;8:6. doi: 10.1186/s13100-017-0089-9. eCollection 2017.


Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads.

Lima L, Sinaimeri B, Sacomoto G, Lopez-Maestre H, Marchet C, Miele V, Sagot MF, Lacroix V.

Algorithms Mol Biol. 2017 Feb 22;12:2. doi: 10.1186/s13015-017-0091-2. eCollection 2017.


Alu SINE analyses of 3,000-year-old human skeletal remains: a pilot study.

Kothe M, Seidenberg V, Hummel S, Piskurek O.

Mob DNA. 2016 Apr 18;7:7. doi: 10.1186/s13100-016-0063-y. eCollection 2016.


DNA methylation variation of human-specific Alu repeats.

Bakshi A, Herke SW, Batzer MA, Kim J.

Epigenetics. 2016;11(2):163-73. doi: 10.1080/15592294.2015.1130518. Epub 2016 Feb 18.


Genome-wide evolutionary and functional analysis of the Equine Repetitive Element 1: an insertion in the myostatin promoter affects gene expression.

Santagostino M, Khoriauli L, Gamba R, Bonuglia M, Klipstein O, Piras FM, Vella F, Russo A, Badiale C, Mazzagatti A, Raimondi E, Nergadze SG, Giulotto E.

BMC Genet. 2015 Oct 26;16:126. doi: 10.1186/s12863-015-0281-1.


Discovery and characterization of Alu repeat sequences via precise local read assembly.

Wildschutte JH, Baron A, Diroff NM, Kidd JM.

Nucleic Acids Res. 2015 Dec 2;43(21):10292-307. doi: 10.1093/nar/gkv1089. Epub 2015 Oct 25.


Sequence Analysis and Characterization of Active Human Alu Subfamilies Based on the 1000 Genomes Pilot Project.

Konkel MK, Walker JA, Hotard AB, Ranck MC, Fontenot CC, Storer J, Stewart C, Marth GT; 1000 Genomes Consortium, Batzer MA.

Genome Biol Evol. 2015 Aug 29;7(9):2608-22. doi: 10.1093/gbe/evv167.


The Influence of LINE-1 and SINE Retrotransposons on Mammalian Genomes.

Richardson SR, Doucet AJ, Kopera HC, Moldovan JB, Garcia-Perez JL, Moran JV.

Microbiol Spectr. 2015 Apr;3(2):MDNA3-0061-2014. doi: 10.1128/microbiolspec.MDNA3-0061-2014. Review.


The impact of transposable elements in genome evolution and genetic instability and their implications in various diseases.

Ayarpadikannan S, Kim HS.

Genomics Inform. 2014 Sep;12(3):98-104. doi: 10.5808/GI.2014.12.3.98. Epub 2014 Sep 30. Review.


Recent publications by ochsner authors.

[No authors listed]

Ochsner J. 2002 Fall;4(4):258-9. No abstract available.


Evolution of the C-type lectin-like receptor genes of the DECTIN-1 cluster in the NK gene complex.

Sattler S, Ghadially H, Hofer E.

ScientificWorldJournal. 2012;2012:931386. doi: 10.1100/2012/931386. Epub 2012 Apr 1. Review.


LINE-1 elements in structural variation and disease.

Beck CR, Garcia-Perez JL, Badge RM, Moran JV.

Annu Rev Genomics Hum Genet. 2011;12:187-215. doi: 10.1146/annurev-genom-082509-141802. Review.


Recent publications by ochsner authors.

[No authors listed]

Ochsner J. 2002 Summer;4(3):193-4. No abstract available.


Alu repeat discovery and characterization within human genomes.

Hormozdiari F, Alkan C, Ventura M, Hajirasouliha I, Malig M, Hach F, Yorukoglu D, Dao P, Bakhshi M, Sahinalp SC, Eichler EE.

Genome Res. 2011 Jun;21(6):840-9. doi: 10.1101/gr.115956.110. Epub 2010 Dec 3.


LINE-1 retrotransposition activity in human genomes.

Beck CR, Collier P, Macfarlane C, Malig M, Kidd JM, Eichler EE, Badge RM, Moran JV.

Cell. 2010 Jun 25;141(7):1159-70. doi: 10.1016/j.cell.2010.05.021.


Mobile element scanning (ME-Scan) by targeted high-throughput sequencing.

Witherspoon DJ, Xing J, Zhang Y, Watkins WS, Batzer MA, Jorde LB.

BMC Genomics. 2010 Jun 30;11:410. doi: 10.1186/1471-2164-11-410.


Laboratory methods for the analysis of primate mobile elements.

Ray DA, Han K, Walker JA, Batzer MA.

Methods Mol Biol. 2010;628:153-79. doi: 10.1007/978-1-60327-367-1_9.


A new set of markers for human identification based on 32 polymorphic Alu insertions.

Mamedov IZ, Shagina IA, Kurnikova MA, Novozhilov SN, Shagin DA, Lebedev YB.

Eur J Hum Genet. 2010 Jul;18(7):808-14. doi: 10.1038/ejhg.2010.22. Epub 2010 Feb 24.


Modeling neutral evolution of Alu elements using a branching process.

Kimmel M, Mathaes M.

BMC Genomics. 2010 Feb 10;11 Suppl 1:S11. doi: 10.1186/1471-2164-11-S1-S11.

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