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Impact of bacterial sRNAs in stress responses.

Holmqvist E, Wagner EGH.

Biochem Soc Trans. 2017 Dec 15;45(6):1203-1212. doi: 10.1042/BST20160363. Epub 2017 Nov 3. Review.


Thiol Starvation induces redox-mediated dysregulation of Escherichia coli biofilm components.

Hufnagel DA, Price JE, Stephenson RE, Kelley J, Benoit MF, Chapman MR.

J Bacteriol. 2017 Oct 16. pii: JB.00389-17. doi: 10.1128/JB.00389-17. [Epub ahead of print]


Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics.

Li S, Breaker RR.

BMC Genomics. 2017 Oct 13;18(1):785. doi: 10.1186/s12864-017-4171-y.


Prediction of bacterial small RNAs in the RsmA (CsrA) and ToxT pathways: a machine learning approach.

Fakhry CT, Kulkarni P, Chen P, Kulkarni R, Zarringhalam K.

BMC Genomics. 2017 Aug 22;18(1):645. doi: 10.1186/s12864-017-4057-z.


Transcriptional Variation of Diverse Enteropathogenic Escherichia coli Isolates under Virulence-Inducing Conditions.

Hazen TH, Daugherty SC, Shetty AC, Nataro JP, Rasko DA.

mSystems. 2017 Jul 25;2(4). pii: e00024-17. doi: 10.1128/mSystems.00024-17. eCollection 2017 Jul-Aug.


Genome-Wide Detection of Small Regulatory RNAs in Deep-Sea Bacterium Shewanella piezotolerans WP3.

Nawaz MZ, Jian H, He Y, Xiong L, Xiao X, Wang F.

Front Microbiol. 2017 Jun 15;8:1093. doi: 10.3389/fmicb.2017.01093. eCollection 2017.


Increasing intracellular magnesium levels with the 31-amino acid MgtS protein.

Wang H, Yin X, Wu Orr M, Dambach M, Curtis R, Storz G.

Proc Natl Acad Sci U S A. 2017 May 30;114(22):5689-5694. doi: 10.1073/pnas.1703415114. Epub 2017 May 16.


Landscape of RNA polyadenylation in E. coli.

Maes A, Gracia C, Innocenti N, Zhang K, Aurell E, Hajnsdorf E.

Nucleic Acids Res. 2017 Mar 17;45(5):2746-2756. doi: 10.1093/nar/gkw894.


Expression, maturation and turnover of DrrS, an unusually stable, DosR regulated small RNA in Mycobacterium tuberculosis.

Moores A, Riesco AB, Schwenk S, Arnvig KB.

PLoS One. 2017 Mar 21;12(3):e0174079. doi: 10.1371/journal.pone.0174079. eCollection 2017.


SgrT, a Small Protein That Packs a Sweet Punch.

Raina M, Storz G.

J Bacteriol. 2017 May 9;199(11). pii: e00130-17. doi: 10.1128/JB.00130-17. Print 2017 Jun 1.


Pleiotropic Regulation of Virulence Genes in Streptococcus mutans by the Conserved Small Protein SprV.

Shankar M, Hossain MS, Biswas I.

J Bacteriol. 2017 Mar 28;199(8). pii: e00847-16. doi: 10.1128/JB.00847-16. Print 2017 Apr 15.


Tools for Sequence-Based miRNA Target Prediction: What to Choose?

Riffo-Campos ÁL, Riquelme I, Brebi-Mieville P.

Int J Mol Sci. 2016 Dec 9;17(12). pii: E1987. Review.


Mycoplasma non-coding RNA: identification of small RNAs and targets.

Siqueira FM, de Morais GL, Higashi S, Beier LS, Breyer GM, de Sá Godinho CP, Sagot MF, Schrank IS, Zaha A, de Vasconcelos AT.

BMC Genomics. 2016 Oct 25;17(Suppl 8):743.


The Small RNA GcvB Promotes Mutagenic Break Repair by Opposing the Membrane Stress Response.

Barreto B, Rogers E, Xia J, Frisch RL, Richters M, Fitzgerald DM, Rosenberg SM.

J Bacteriol. 2016 Nov 18;198(24):3296-3308. Print 2016 Dec 15.


Global Mapping of Small RNA-Target Interactions in Bacteria.

Melamed S, Peer A, Faigenbaum-Romm R, Gatt YE, Reiss N, Bar A, Altuvia Y, Argaman L, Margalit H.

Mol Cell. 2016 Sep 1;63(5):884-97. doi: 10.1016/j.molcel.2016.07.026.


Classic Spotlight: Hfq, from a Specific Host Factor for Phage Replication to a Global Player in Riboregulation.

Becker A.

J Bacteriol. 2016 Aug 11;198(17):2279-80. doi: 10.1128/JB.00472-16. Print 2016 Sep 1. No abstract available.


The Type Three Secretion System 2-Encoded Regulator EtrB Modulates Enterohemorrhagic Escherichia coli Virulence Gene Expression.

Luzader DH, Willsey GG, Wargo MJ, Kendall MM.

Infect Immun. 2016 Aug 19;84(9):2555-65. doi: 10.1128/IAI.00407-16. Print 2016 Sep.


Comprehensive identification of translation start sites by tetracycline-inhibited ribosome profiling.

Nakahigashi K, Takai Y, Kimura M, Abe N, Nakayashiki T, Shiwa Y, Yoshikawa H, Wanner BL, Ishihama Y, Mori H.

DNA Res. 2016 Jun;23(3):193-201. doi: 10.1093/dnares/dsw008. Epub 2016 Mar 23.


The unmasking of 'junk' RNA reveals novel sRNAs: from processed RNA fragments to marooned riboswitches.

De Lay NR, Garsin DA.

Curr Opin Microbiol. 2016 Apr;30:16-21. doi: 10.1016/j.mib.2015.12.006. Epub 2016 Jan 6. Review.


Differential expression of small RNAs under chemical stress and fed-batch fermentation in E. coli.

Rau MH, Bojanovič K, Nielsen AT, Long KS.

BMC Genomics. 2015 Dec 10;16:1051. doi: 10.1186/s12864-015-2231-8.

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