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Valorization of Spent Escherichia coli Media Using Green Microalgae Chlamydomonas reinhardtii and Feedstock Production.

Zhang JG, Zhang F, Thakur K, Hu F, Wei ZJ.

Front Microbiol. 2017 Jun 7;8:1026. doi: 10.3389/fmicb.2017.01026. eCollection 2017.


Eliminating acetate formation improves citramalate production by metabolically engineered Escherichia coli.

Parimi NS, Durie IA, Wu X, Niyas AMM, Eiteman MA.

Microb Cell Fact. 2017 Jun 21;16(1):114. doi: 10.1186/s12934-017-0729-2.


Mechanistic insights into manganese oxidation of a soil-borne Mn(II)-oxidizing Escherichia coli strain by global proteomic and genetic analyses.

Wang Z, Wang J, Liu J, Chen H, Li M, Li L.

Sci Rep. 2017 May 2;7(1):1352. doi: 10.1038/s41598-017-01552-3.


Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism.

Ewald J, Bartl M, Dandekar T, Kaleta C.

PLoS Comput Biol. 2017 Feb 17;13(2):e1005371. doi: 10.1371/journal.pcbi.1005371. eCollection 2017 Feb.


Acetate fluxes in Escherichia coli are determined by the thermodynamic control of the Pta-AckA pathway.

Enjalbert B, Millard P, Dinclaux M, Portais JC, L├ętisse F.

Sci Rep. 2017 Feb 10;7:42135. doi: 10.1038/srep42135.


Divergent functional isoforms drive niche specialisation for nutrient acquisition and use in rumen microbiome.

Rubino F, Carberry C, M Waters S, Kenny D, McCabe MS, Creevey CJ.

ISME J. 2017 Apr;11(4):932-944. doi: 10.1038/ismej.2016.172. Epub 2017 Jan 13.


Pyruvate production using engineered Escherichia coli.

Akita H, Nakashima N, Hoshino T.

AMB Express. 2016 Dec;6(1):94. doi: 10.1186/s13568-016-0259-z. Epub 2016 Oct 8.


Complete genome and gene expression analyses of Asaia bogorensis reveal unique responses to culture with mammalian cells as a potential opportunistic human pathogen.

Kawai M, Higashiura N, Hayasaki K, Okamoto N, Takami A, Hirakawa H, Matsushita K, Azuma Y.

DNA Res. 2015 Oct;22(5):357-66. doi: 10.1093/dnares/dsv018. Epub 2015 Sep 10.


Role of L-alanine for redox self-sufficient amination of alcohols.

Klatte S, Wendisch VF.

Microb Cell Fact. 2015 Jan 23;14:9. doi: 10.1186/s12934-014-0189-x.


Engineering of Serine-Deamination pathway, Entner-Doudoroff pathway and pyruvate dehydrogenase complex to improve poly(3-hydroxybutyrate) production in Escherichia coli.

Zhang Y, Lin Z, Liu Q, Li Y, Wang Z, Ma H, Chen T, Zhao X.

Microb Cell Fact. 2014 Dec 16;13:172. doi: 10.1186/s12934-014-0172-6.


Alternative acetate production pathways in Chlamydomonas reinhardtii during dark anoxia and the dominant role of chloroplasts in fermentative acetate production.

Yang W, Catalanotti C, D'Adamo S, Wittkopp TM, Ingram-Smith CJ, Mackinder L, Miller TE, Heuberger AL, Peers G, Smith KS, Jonikas MC, Grossman AR, Posewitz MC.

Plant Cell. 2014 Nov;26(11):4499-518. doi: 10.1105/tpc.114.129965. Epub 2014 Nov 7.


A genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database.

Weaver DS, Keseler IM, Mackie A, Paulsen IT, Karp PD.

BMC Syst Biol. 2014 Jun 30;8:79. doi: 10.1186/1752-0509-8-79.


Ex uno plures: clonal reinforcement drives evolution of a simple microbial community.

Kinnersley M, Wenger J, Kroll E, Adams J, Sherlock G, Rosenzweig F.

PLoS Genet. 2014 Jun 26;10(6):e1004430. doi: 10.1371/journal.pgen.1004430. eCollection 2014 Jun.


Production of medium chain length fatty alcohols from glucose in Escherichia coli.

Youngquist JT, Schumacher MH, Rose JP, Raines TC, Politz MC, Copeland MF, Pfleger BF.

Metab Eng. 2013 Nov;20:177-86. doi: 10.1016/j.ymben.2013.10.006. Epub 2013 Oct 17.


Uncoupling of substrate-level phosphorylation in Escherichia coli during glucose-limited growth.

Sharma P, Hellingwerf KJ, de Mattos MJ, Bekker M.

Appl Environ Microbiol. 2012 Oct;78(19):6908-13. doi: 10.1128/AEM.01507-12. Epub 2012 Jul 27.


Hydrogen production by recombinant Escherichia coli strains.

Maeda T, Sanchez-Torres V, Wood TK.

Microb Biotechnol. 2012 Mar;5(2):214-25. doi: 10.1111/j.1751-7915.2011.00282.x. Epub 2011 Sep 6. Review.


Engineering Escherichia coli BL21(DE3) derivative strains to minimize E. coli protein contamination after purification by immobilized metal affinity chromatography.

Robichon C, Luo J, Causey TB, Benner JS, Samuelson JC.

Appl Environ Microbiol. 2011 Jul;77(13):4634-46. doi: 10.1128/AEM.00119-11. Epub 2011 May 20.


Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase.

Valgepea K, Adamberg K, Nahku R, Lahtvee PJ, Arike L, Vilu R.

BMC Syst Biol. 2010 Dec 1;4:166. doi: 10.1186/1752-0509-4-166.


Flavin redox switching of protein functions.

Becker DF, Zhu W, Moxley MA.

Antioxid Redox Signal. 2011 Mar 15;14(6):1079-91. doi: 10.1089/ars.2010.3417. Epub 2010 Oct 28. Review.

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