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Items: 1 to 20 of 27


Transcriptome Analysis on Monocytes from Patients with Neovascular Age-Related Macular Degeneration.

Grunin M, Hagbi-Levi S, Rinsky B, Smith Y, Chowers I.

Sci Rep. 2016 Jul 4;6:29046. doi: 10.1038/srep29046.


Human dCTP pyrophosphatase 1 promotes breast cancer cell growth and stemness through the modulation on 5-methyl-dCTP metabolism and global hypomethylation.

Song FF, Xia LL, Ji P, Tang YB, Huang ZM, Zhu L, Zhang J, Wang JQ, Zhao GP, Ge HL, Zhang Y, Wang Y.

Oncogenesis. 2015 Jun 15;4:e159. doi: 10.1038/oncsis.2015.10.


Solutions to Peto's paradox revealed by mathematical modelling and cross-species cancer gene analysis.

Caulin AF, Graham TA, Wang LS, Maley CC.

Philos Trans R Soc Lond B Biol Sci. 2015 Jul 19;370(1673). pii: 20140222. doi: 10.1098/rstb.2014.0222.


NCG 4.0: the network of cancer genes in the era of massive mutational screenings of cancer genomes.

An O, Pendino V, D'Antonio M, Ratti E, Gentilini M, Ciccarelli FD.

Database (Oxford). 2014 Mar 7;2014:bau015. doi: 10.1093/database/bau015. Print 2014.


Transcriptome-wide expansion of non-coding regulatory switches: evidence from co-occurrence of Alu exonization, antisense and editing.

Mandal AK, Pandey R, Jha V, Mukerji M.

Nucleic Acids Res. 2013 Feb 1;41(4):2121-37. doi: 10.1093/nar/gks1457. Epub 2013 Jan 8.


Errors in CGAP xProfiler and cDNA DGED: the importance of library parsing and gene selection algorithms.

Milnthorpe AT, Soloviev M.

BMC Bioinformatics. 2011 Apr 15;12:97. doi: 10.1186/1471-2105-12-97.


Tissue-specific and ubiquitous expression patterns from alternative promoters of human genes.

Jacox E, Gotea V, Ovcharenko I, Elnitski L.

PLoS One. 2010 Aug 18;5(8):e12274. doi: 10.1371/journal.pone.0012274.


A sequence-based approach to identify reference genes for gene expression analysis.

Chari R, Lonergan KM, Pikor LA, Coe BP, Zhu CQ, Chan TH, MacAulay CE, Tsao MS, Lam S, Ng RT, Lam WL.

BMC Med Genomics. 2010 Aug 3;3:32. doi: 10.1186/1755-8794-3-32.


Cancer reduces transcriptome specialization.

Martínez O, Reyes-Valdés MH, Herrera-Estrella L.

PLoS One. 2010 May 3;5(5):e10398. doi: 10.1371/journal.pone.0010398.


Integrating the multiple dimensions of genomic and epigenomic landscapes of cancer.

Chari R, Thu KL, Wilson IM, Lockwood WW, Lonergan KM, Coe BP, Malloff CA, Gazdar AF, Lam S, Garnis C, MacAulay CE, Alvarez CE, Lam WL.

Cancer Metastasis Rev. 2010 Mar;29(1):73-93. doi: 10.1007/s10555-010-9199-2. Review.


In silico analysis and verification of S100 gene expression in gastric cancer.

Liu J, Li X, Dong GL, Zhang HW, Chen DL, Du JJ, Zheng JY, Li JP, Wang WZ.

BMC Cancer. 2008 Sep 16;8:261. doi: 10.1186/1471-2407-8-261.


SNP and mutation data on the web - hidden treasures for uncovering.

Barnes MR.

Comp Funct Genomics. 2002;3(1):67-74. doi: 10.1002/cfg.131.


Generation of a non-small cell lung cancer transcriptome microarray.

Tanney A, Oliver GR, Farztdinov V, Kennedy RD, Mulligan JM, Fulton CE, Farragher SM, Field JK, Johnston PG, Harkin DP, Proutski V, Mulligan KA.

BMC Med Genomics. 2008 May 30;1:20. doi: 10.1186/1755-8794-1-20.


PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites.

Cheng D, Knox C, Young N, Stothard P, Damaraju S, Wishart DS.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W399-405. doi: 10.1093/nar/gkn296. Epub 2008 May 16.


Differential remodeling of a T-cell transcriptome following CD8- versus CD3-induced signaling.

Abidi SH, Dong T, Vuong MT, Sreenu VB, Rowland-Jones SL, Evans EJ, Davis SJ.

Cell Res. 2008 Jun;18(6):641-8. doi: 10.1038/cr.2008.56.


In silico analysis of gastric carcinoma Serial Analysis of Gene Expression libraries reveals different profiles associated with ethnicity.

Ossandon FJ, Villarroel C, Aguayo F, Santibanez E, Oue N, Yasui W, Corvalan AH.

Mol Cancer. 2008 Feb 27;7:22. doi: 10.1186/1476-4598-7-22.


The UCSC Genome Browser Database: 2008 update.

Karolchik D, Kuhn RM, Baertsch R, Barber GP, Clawson H, Diekhans M, Giardine B, Harte RA, Hinrichs AS, Hsu F, Kober KM, Miller W, Pedersen JS, Pohl A, Raney BJ, Rhead B, Rosenbloom KR, Smith KE, Stanke M, Thakkapallayil A, Trumbower H, Wang T, Zweig AS, Haussler D, Kent WJ.

Nucleic Acids Res. 2008 Jan;36(Database issue):D773-9. Epub 2007 Dec 17.


SAGETTARIUS: a program to reduce the number of tags mapped to multiple transcripts and to plan SAGE sequencing stages.

Bianchetti L, Wu Y, Guerin E, Plewniak F, Poch O.

Nucleic Acids Res. 2007;35(18):e122. Epub 2007 Sep 20.

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